Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20073
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58050.1 68416.m06471 expressed protein                             28   4.4  
At5g16350.1 68418.m01911 expressed protein                             28   5.8  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    28   5.8  

>At3g58050.1 68416.m06471 expressed protein
          Length = 1209

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 134 GCPAPQTETHYC 99
           GCP+P+ E HYC
Sbjct: 635 GCPSPRAENHYC 646


>At5g16350.1 68418.m01911 expressed protein
          Length = 488

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 181 VNAATHLATKVSLLITAVPPLKPKRITASRQK*AGWWYLPVRT 53
           V A TH  +   +L TA+P +K +   +   K  GW+   + T
Sbjct: 147 VLACTHKTSNPDMLSTAIPSVKRRSTVSHSLKKTGWFLTAIFT 189


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +3

Query: 63   GRYHHPAYFC---REAVMRFGLRGGTAVIKSETL 155
            GRY HPAY C   RE + R  L    + +  + L
Sbjct: 1711 GRYRHPAYCCERYRELIQRHILSASDSAVNEKNL 1744


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,397,632
Number of Sequences: 28952
Number of extensions: 259614
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)