Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20072
         (789 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    43   0.008
UniRef50_UPI0000D56F35 Cluster: PREDICTED: similar to CG5514-PB,...    40   0.071
UniRef50_Q54F86 Cluster: Putative uncharacterized protein; n=1; ...    36   1.5  
UniRef50_Q7RT51 Cluster: Cysteine repeat modular protein 4 PbCRM...    33   8.2  
UniRef50_Q09252 Cluster: Uncharacterized protein C16C10.6; n=2; ...    33   8.2  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 43.2 bits (97), Expect = 0.008
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +2

Query: 665 FLMLIWVGELTAHLVLSGY*SHRHL 739
           FL+L WV ELTAHLVLSGY S RHL
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSPRHL 178


>UniRef50_UPI0000D56F35 Cluster: PREDICTED: similar to CG5514-PB,
           isoform B; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG5514-PB, isoform B - Tribolium castaneum
          Length = 748

 Score = 39.9 bits (89), Expect = 0.071
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 1   LPHSPS-SDKSVENYEQNALHSPNGKLKTTQRAKIQRYSTTDLYKPKLHYLSRR 159
           LP SP+ SDKS    E+  + +P  K     +   QRYS+ DLYKP+  ++S R
Sbjct: 688 LPLSPAESDKSTGKKEE--ISTPKAKRNNVNKVNNQRYSSDDLYKPRPTFISTR 739


>UniRef50_Q54F86 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 972

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 187 DKHFTVLYCSYEINSVVSVCKGQLYCIFVFSRAVSSSI 74
           +K  ++ YC YE+N ++ +  G  YCI   S+  ++SI
Sbjct: 362 EKECSICYCEYEVNEMIELICGHSYCIGCMSQYFTTSI 399


>UniRef50_Q7RT51 Cluster: Cysteine repeat modular protein 4 PbCRM4;
            n=18; Plasmodium (Vinckeia)|Rep: Cysteine repeat modular
            protein 4 PbCRM4 - Plasmodium yoelii yoelii
          Length = 4562

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 193  KNDKHFTVLYCSYEINSVVSVCKGQLYCIFV-FSR 92
            KN+ +FTV Y    +NS +S CK  +YC  V FSR
Sbjct: 2892 KNNPNFTVTYTP-NLNSCISSCKSNIYCTGVEFSR 2925


>UniRef50_Q09252 Cluster: Uncharacterized protein C16C10.6; n=2;
           Caenorhabditis|Rep: Uncharacterized protein C16C10.6 -
           Caenorhabditis elegans
          Length = 392

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 10  SPSSDKSVENYEQNALHSPNGKLKTTQRAKIQRYSTTDLYKPK 138
           SP+S KS+E+ E  +  SP GK + +++A   + S  D  KPK
Sbjct: 308 SPTSRKSIESRESGSRRSPEGKSEKSEKA--PKISLKDKLKPK 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,328,425
Number of Sequences: 1657284
Number of extensions: 14252465
Number of successful extensions: 27846
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27845
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)