Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20072
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0634 + 4656888-4657112,4657458-4658171                           31   0.79 
07_01_0670 + 5030971-5032698                                           30   1.8  
01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841...    30   2.4  
07_01_0671 + 5036069-5037670                                           29   3.2  
01_05_0245 + 19872219-19872231,19872298-19872395,19872449-198725...    28   7.4  

>03_01_0634 + 4656888-4657112,4657458-4658171
          Length = 312

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 162 QYKTVKCLSFFCNVNTHECSRELTPGKR 245
           Q +T  CL+F C+  +H CSR++ P KR
Sbjct: 267 QAQTNSCLAFDCSNISHICSRDVCPTKR 294


>07_01_0670 + 5030971-5032698
          Length = 575

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 55  LHSPNGKLKTTQRAKIQRYSTTDLYKPKLHYLSRRNNIR 171
           LH P G  K+T  A +  Y   D+Y  +L  +   NN+R
Sbjct: 278 LHGPPGTGKSTMVAAMANYLDYDIYDVELTVVGNNNNLR 316


>01_03_0206 -
           13783169-13783651,13783761-13783903,13783962-13784128,
           13784641-13785149,13786031-13786312,13786397-13786792,
           13787232-13787504
          Length = 750

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 1   LPHSPSSDKSVENYEQNALHSPNGKLKTTQRAKIQRYSTTD 123
           LP+SPS D  ++ + +NA H  +     + R  + +YS  D
Sbjct: 698 LPNSPSLDPHLQPWYRNAAHVLSSAETASNRVMLMKYSPAD 738


>07_01_0671 + 5036069-5037670
          Length = 533

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 55  LHSPNGKLKTTQRAKIQRYSTTDLYKPKLHYLSRRNNIR 171
           LH P G  K+T  A +  Y   D+Y  +L  +S  N++R
Sbjct: 286 LHGPPGTGKSTMIASMANYLDYDIYDVELTMVSDNNDLR 324


>01_05_0245 +
           19872219-19872231,19872298-19872395,19872449-19872592,
           19873322-19873351,19873463-19873525,19873608-19873663,
           19874040-19874096,19874338-19874372,19874698-19874787,
           19874855-19874901,19875341-19875421
          Length = 237

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 768 NSISRRHLRRRCLWLQ*PLNTRWAVSSPTHISI 670
           + + RR+ +R C     P+ TRW  S+P  I +
Sbjct: 36  SQLRRRNSQRNCSCTHSPIATRWPTSTPLRIPL 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,251,190
Number of Sequences: 37544
Number of extensions: 367538
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)