Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20072
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41555| Best HMM Match : CXC (HMM E-Value=3.9)                       30   1.9  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               28   7.5  
SB_19142| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_41555| Best HMM Match : CXC (HMM E-Value=3.9)
          Length = 607

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 123 PLQTETTLFIS*EQYKTVKCLSFFCN-VNTHECSRELTPGKRIPRHDARYDRCRNVLKFP 299
           PL T+  + ++ ++  T +    F   V TH+ ++E     R    +  Y   R  LKF 
Sbjct: 181 PLLTQLEIHVAEDKSLTTRVRDIFKETVVTHKSAKE----SRRWLSEPSYGYWRQQLKFA 236

Query: 300 VWCVRSVCSRVLT 338
           VWC  + C   LT
Sbjct: 237 VWCATAGCGMSLT 249


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 540  FN*IFRIRAERQVQTYSSNLNPFSLTMQ 457
            FN   RI A+ ++QT+SSN +  + T+Q
Sbjct: 2849 FNETLRIMADSKIQTHSSNAHKAAFTLQ 2876


>SB_19142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 47

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 103 VFSRAVSSSIFRWANVERSVRSFRPTYRW 17
           +FSR V    +R A  ER +R F P Y W
Sbjct: 19  LFSRVV---FYRHARCERLIREFNPIYTW 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,492,081
Number of Sequences: 59808
Number of extensions: 470967
Number of successful extensions: 1250
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)