Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20072
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical
           protein C16C10.6 protein.
          Length = 392

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 10  SPSSDKSVENYEQNALHSPNGKLKTTQRAKIQRYSTTDLYKPK 138
           SP+S KS+E+ E  +  SP GK + +++A   + S  D  KPK
Sbjct: 308 SPTSRKSIESRESGSRRSPEGKSEKSEKA--PKISLKDKLKPK 348


>Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical
           protein D1054.12 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 247 YPGMMHVMTGVEMSLNSLFGVYAACAQ 327
           Y G++HV+T +E+ ++ LFG Y   A+
Sbjct: 15  YSGVLHVLTSIELPIH-LFGAYIIVAK 40


>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical protein
            F29G6.3c protein.
          Length = 1453

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 13   PSSDKSVENYEQNALHSPNGKLKTTQRAKIQRYSTT 120
            PS   SV NY ++  HS    + T + A +QR + T
Sbjct: 1245 PSRPSSVANYVKHQPHSRTSTVSTVRGAPVQRVNPT 1280


>Z78543-3|CAB01755.2|  772|Caenorhabditis elegans Hypothetical
           protein F29G6.3a protein.
          Length = 772

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 13  PSSDKSVENYEQNALHSPNGKLKTTQRAKIQRYSTT 120
           PS   SV NY ++  HS    + T + A +QR + T
Sbjct: 564 PSRPSSVANYVKHQPHSRTSTVSTVRGAPVQRVNPT 599


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,584,041
Number of Sequences: 27780
Number of extensions: 365615
Number of successful extensions: 631
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)