Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20072
         (789 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33580.1 68417.m04771 carbonic anhydrase family protein / car...    30   2.0  

>At4g33580.1 68417.m04771 carbonic anhydrase family protein /
          carbonate dehydratase family protein similar to
          SP|P46512 Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate
          dehydratase 1) {Flaveria linearis}; contains Pfam
          profile PF00484: Carbonic anhydrase
          Length = 301

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 7  HSPSSDKSVENYEQNALHSPNGKLKTTQ 90
          H P S  S+ N +  A+  PN  LKTTQ
Sbjct: 12 HDPFSSTSLLNLQTQAIFGPNHSLKTTQ 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,054,654
Number of Sequences: 28952
Number of extensions: 321030
Number of successful extensions: 613
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)