Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20070
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    28   1.4  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    28   1.4  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   2.5  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    27   3.3  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   5.8  
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   5.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.8  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   7.6  

>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 6   KRAAPESDNSALKDFKVEYSKSSRAT 83
           +R + + +NSALKD  VEY  +  AT
Sbjct: 80  QRESEQFENSALKDINVEYQSNLSAT 105


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 296 FSQLSDLLS*DHQIWKILSS-SEVQKFISAFNETRQVVPSWL 174
           FSQ+ D +  D   WK L+S +E  KF +A      V PS++
Sbjct: 747 FSQILDKIGVDQPAWKELTSVAEASKFANAVGYPVLVRPSYV 788


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 295 FHNYLICFLKIIKSGRFSPPAKYRSSFLHLTKQG 194
           F+ Y  CF K +K   FSP  K R   + L +QG
Sbjct: 118 FYGYSFCFQKFLKICLFSP--KNRDRLVDLFRQG 149


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -2

Query: 197 RQVVPSWLSTIFHTNFCII*NLTYSNFILTNFNFTFRACGPTAFRIFNFEVL 42
           R+++  WL  I H+NFC++    Y    + +   + R+C  + F++     L
Sbjct: 169 REILNEWLVEI-HSNFCLMPETLYLAVNIIDRFLSRRSCSLSKFQLTGITAL 219


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 318 LSSGFISVFTII*SAFLRSSNLED----SLLQRSTEVHFC 211
           +SS  + +  I   + ++S NL+D    S + R T VHFC
Sbjct: 254 ISSSSLQIIDINTLSLVKSINLKDDESFSFISRLTSVHFC 293


>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = -1

Query: 591 LPMFTFRTGLESSECHTIC*TIKTLSLSVGIPCKLYSKIFSTS-----FL-FVFIKAFLC 430
           L M   R       C+T+  +   LS+     C LY K+F +      FL ++F    + 
Sbjct: 4   LKMMLLRLIKSKEHCYTMVISFAVLSIHYACECFLYPKLFDSQRSPSPFLRWLFSVLGVL 63

Query: 429 LSNNLFC 409
           +S ++FC
Sbjct: 64  MSMDVFC 70


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/61 (21%), Positives = 26/61 (42%)
 Frame = +1

Query: 43  RTSKLNIRKAVGPHALNVKLKFVRMKLEYVRFYMIQKLV*NMVDNQDGTTCLVSLNAEMN 222
           R    ++ ++   H   + +KF   +L    F+ + K+V N  +N D    +  +    N
Sbjct: 384 RDDSKHLYESAVDHGRRLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVKFILDSQN 443

Query: 223 F 225
           F
Sbjct: 444 F 444


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 78  ATCPECEIKICKDEIRICKILYDTEVGMKYG 170
           A C E ++++ KDE+ +C IL+D  +   +G
Sbjct: 68  ADCVETDVRLTKDEV-VC-ILHDRNLNRVFG 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,192
Number of Sequences: 5004
Number of extensions: 50702
Number of successful extensions: 157
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)