Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20070
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 57 1e-08
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 51 7e-07
01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478... 34 0.091
02_03_0378 + 18327622-18329826 31 1.1
04_03_0735 + 19141038-19143227 30 1.5
04_04_0127 + 22957203-22957420,22957552-22957675,22957784-22958002 29 2.6
12_02_0440 - 19109807-19110132,19110219-19110291,19110444-191105... 29 4.5
10_01_0244 + 2549102-2549158,2549205-2549334,2549422-2549559,255... 28 6.0
11_01_0193 - 1534051-1534092,1536343-1537065 28 7.9
03_02_0877 - 12072996-12073285,12074312-12074615,12074699-120748... 28 7.9
03_01_0602 - 4428651-4428847,4429070-4429150,4429226-4429604,443... 28 7.9
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 57.2 bits (132), Expect = 1e-08
Identities = 31/64 (48%), Positives = 35/64 (54%)
Frame = +1
Query: 487 QFTGNPYRKTECFDRLADCMTFGALETCPECKHGQLVVDTLGYKCTGNLSEWTKCTYQTD 666
Q T P R DR AD M FGAL TCP C L Y C+G +SEW+KCTY T
Sbjct: 247 QDTSGPER--HLLDRCADGMLFGALGTCPVCS-SFLYYHGGQYHCSGYVSEWSKCTYSTT 303
Query: 667 KPKR 678
+P R
Sbjct: 304 EPVR 307
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +3
Query: 42 KDFKVEYSKSSRATCPECEIKICKDEIRICKILYD 146
K +K EY+KS R++C C I KD++R+ K++++
Sbjct: 6 KAWKAEYAKSGRSSCKSCRSPIGKDQLRLGKMMWN 40
>02_04_0080 -
19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/50 (46%), Positives = 28/50 (56%)
Frame = +1
Query: 529 RLADCMTFGALETCPECKHGQLVVDTLGYKCTGNLSEWTKCTYQTDKPKR 678
R D M +G L+ CP C GQL L Y CTG SEW C++ T+ P R
Sbjct: 125 RCEDVMFYGPLDKCPVCG-GQLECKGLKYNCTGTHSEWACCSFSTNNPSR 173
>01_06_0634 +
30746767-30747012,30747083-30747118,30747554-30747850,
30748482-30748544,30748643-30748696,30748837-30748854,
30749554-30749625,30749731-30749787,30750160-30750236,
30751013-30751094,30751585-30751701,30752083-30752210,
30753074-30753143,30753725-30753765,30753963-30753990,
30754151-30754210
Length = 481
Score = 34.3 bits (75), Expect = 0.091
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 54 VEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCF 203
VEY+KS R+TC C I +R+ + D G +W+H+ CF
Sbjct: 128 VEYAKSGRSTCKGCSESIAAGALRLGASIRDPR-GF---DSTKWYHIACF 173
>02_03_0378 + 18327622-18329826
Length = 734
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 568 CPECKHGQLVVDTLGYKCTGNLSEWTKCTYQ 660
CP C H + V+T GY C G S ++ T Q
Sbjct: 214 CPNCHHAFMAVET-GYPCNGTSSSFSWSTKQ 243
>04_03_0735 + 19141038-19143227
Length = 729
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 568 CPECKHGQLVVDTLGYKCTGNLSEWTKCTYQ 660
CP C H L V+T G+ C G+ S ++ T Q
Sbjct: 203 CPNCHHAFLAVET-GFPCNGSSSSFSWSTKQ 232
>04_04_0127 + 22957203-22957420,22957552-22957675,22957784-22958002
Length = 186
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Frame = -1
Query: 675 LRFISLIGTFGPLAQI-----TCAFITKGI-----YN*LPMFTFRTGLESSECHTIC*TI 526
LRFI++IGT G + T F T+ I Y+ LP FTF + C + +I
Sbjct: 31 LRFIAIIGTIGSAIAMGTTNETLPFFTQFIQFEAKYSDLPSFTFFVAANAVVCTYLVLSI 90
Query: 525 KTLSLSVGIPCKLYSKIFSTSF 460
+ + P YS++F F
Sbjct: 91 PLSIVHILRPRARYSRLFLVFF 112
>12_02_0440 -
19109807-19110132,19110219-19110291,19110444-19110586,
19110787-19111002,19111072-19111387,19111474-19111884,
19113979-19114005
Length = 503
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 610 QGYLQLTAHVYIQDRSRELRMSYNLLNDQNTQS 512
+ ++ + A IQD+ +EL+ Y L D TQS
Sbjct: 315 EDFVDVPAGGQIQDKEKELKRDYRCLKDARTQS 347
>10_01_0244 +
2549102-2549158,2549205-2549334,2549422-2549559,
2550078-2550205,2550346-2550396
Length = 167
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +1
Query: 499 NPYRKTECFDRLADCMTFGALE---TCPECKHGQLVVD 603
NP T+C C +E TCP C G+LVVD
Sbjct: 120 NPRSMTKCEHHFHLCCILEWMERSETCPVCDQGKLVVD 157
>11_01_0193 - 1534051-1534092,1536343-1537065
Length = 254
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 230 LRWRRESSRFDDLKKADQIIVKTEIKPLESPD 325
+RWRR +R L+ ADQ + T ++ PD
Sbjct: 28 VRWRRAEARHGPLRAADQEQLLTALREQPDPD 59
>03_02_0877 -
12072996-12073285,12074312-12074615,12074699-12074871,
12075299-12075434,12076327-12076788,12076882-12077189,
12077724-12078105
Length = 684
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 676 SSVYQFDRYIWSTRSNYLCIYNQGYLQLTAH 584
+S +D ++W YL N YLQL H
Sbjct: 325 NSTSYWDEFVWGGSWMYLATGNSSYLQLATH 355
>03_01_0602 -
4428651-4428847,4429070-4429150,4429226-4429604,
4430084-4430216,4430298-4430404,4430490-4430761,
4431581-4431755
Length = 447
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +3
Query: 27 DNSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFV 206
D AL+D + + + + CP+ + D + +L+D ++ + + W+H+P F
Sbjct: 320 DGPALRDAESQQYLAQVSCCPQVHVVASVDHVN-APLLWDKKM-VHTQFKWSWYHVPTFA 377
Query: 207 KCRNELLYFA 236
+ E ++F+
Sbjct: 378 PYKVEGMHFS 387
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,756,561
Number of Sequences: 37544
Number of extensions: 288919
Number of successful extensions: 749
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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