Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20070
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)                    66   2e-11
SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)               38   0.010
SB_57704| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   8.0  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              28   8.0  

>SB_53664| Best HMM Match : PARP_reg (HMM E-Value=0)
          Length = 834

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/60 (46%), Positives = 40/60 (66%)
 Frame = +3

Query: 45  DFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVKCRNEL 224
           D   EY+KSSR+TC  C+ +I K E+R+ K++     G KYG  P+WHH+PCF+K   +L
Sbjct: 127 DLLAEYAKSSRSTCKHCDEQIVKGELRLAKVM----DGEKYGPVPKWHHVPCFLKAMPDL 182



 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 48  FKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 209
           FK EY+KS+R++C  C+  I KD +R+ +++            P W H  CF K
Sbjct: 33  FKTEYAKSNRSSCKSCKSNIGKDSLRVARMVQ----------VPNWFHFSCFFK 76


>SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)
          Length = 1311

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = +3

Query: 39  LKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPC 200
           LK F VEY+   RA C  C+ +I K   RI K L         G   +W+H+ C
Sbjct: 9   LKSFLVEYAPQGRAKCKGCKEQIEKSSARIAK-LAPNPFSEDGGLMKQWYHVKC 61


>SB_57704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 250 RFSPPAKYRSSFLHLTKQGKWCHLGCP 170
           R  PP + R  F+H  + G  CH+G P
Sbjct: 120 RLRPPLRTRD-FIHQMRHGMLCHVGAP 145


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 226 RSSFLHLTKQGKWCHLGCPP-YFI 158
           ++ + +L K G++CH  CP  YF+
Sbjct: 484 KNGYYYLEKDGRFCHKSCPKGYFV 507


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 226 RSSFLHLTKQGKWCHLGCPP-YFI 158
           ++ + +L K G++CH  CP  YF+
Sbjct: 133 KNGYYYLEKDGRFCHKSCPKGYFV 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,736,820
Number of Sequences: 59808
Number of extensions: 357021
Number of successful extensions: 987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)