Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20070
         (678 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D13806-1|BAA02964.1|  994|Drosophila melanogaster poly(ADP-ribos...   112   4e-25
BT015238-1|AAT94467.1|  994|Drosophila melanogaster RE04933p pro...   112   4e-25
AF533701-1|AAM93435.1|  613|Drosophila melanogaster PARP-E prote...   112   4e-25
AF051548-1|AAC24518.1|  994|Drosophila melanogaster poly(ADP-rib...   112   4e-25
AY047557-1|AAK77289.1|  555|Drosophila melanogaster GH07062p pro...    29   4.4  
AF080444-1|AAD29852.1|  268|Drosophila melanogaster pugilistDomi...    29   4.4  
AE014297-2639|AAF55646.2|  555|Drosophila melanogaster CG5555-PA...    29   4.4  

>D13806-1|BAA02964.1|  994|Drosophila melanogaster poly(ADP-ribose)
           polymerase protein.
          Length = 994

 Score =  112 bits (270), Expect = 4e-25
 Identities = 49/75 (65%), Positives = 60/75 (80%)
 Frame = +3

Query: 30  NSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 209
           N ALKDF +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGGQP WHHL CF +
Sbjct: 105 NLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQ 164

Query: 210 CRNELLYFAGGENLP 254
            R+EL +FA GE++P
Sbjct: 165 LRSELGWFASGEDMP 179



 Score = 65.7 bits (153), Expect = 6e-11
 Identities = 27/52 (51%), Positives = 34/52 (65%)
 Frame = +1

Query: 523 FDRLADCMTFGALETCPECKHGQLVVDTLGYKCTGNLSEWTKCTYQTDKPKR 678
           FD+ AD +TFGA+E+C EC   Q +V+  GY C GN SEWTKC     +P R
Sbjct: 270 FDQTADLLTFGAIESCSECNSCQFIVNKSGYICNGNHSEWTKCNKLLKEPTR 321



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 48  FKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 209
           +  EY+++ RATC  C+  I KD +RI  ++       K    P W H  CF K
Sbjct: 7   YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKV---PNWFHKTCFFK 57


>BT015238-1|AAT94467.1|  994|Drosophila melanogaster RE04933p
           protein.
          Length = 994

 Score =  112 bits (270), Expect = 4e-25
 Identities = 49/75 (65%), Positives = 60/75 (80%)
 Frame = +3

Query: 30  NSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 209
           N ALKDF +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGGQP WHHL CF +
Sbjct: 105 NLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQ 164

Query: 210 CRNELLYFAGGENLP 254
            R+EL +FA GE++P
Sbjct: 165 LRSELGWFASGEDMP 179



 Score = 65.7 bits (153), Expect = 6e-11
 Identities = 27/52 (51%), Positives = 34/52 (65%)
 Frame = +1

Query: 523 FDRLADCMTFGALETCPECKHGQLVVDTLGYKCTGNLSEWTKCTYQTDKPKR 678
           FD+ AD +TFGA+E+C EC   Q +V+  GY C GN SEWTKC     +P R
Sbjct: 270 FDQTADLLTFGAIESCSECNSCQFIVNKSGYICNGNHSEWTKCNKLLKEPTR 321



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 48  FKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 209
           +  EY+++ RATC  C+  I KD +RI  ++       K    P W H  CF K
Sbjct: 7   YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKV---PNWFHKTCFFK 57


>AF533701-1|AAM93435.1|  613|Drosophila melanogaster PARP-E protein
           protein.
          Length = 613

 Score =  112 bits (270), Expect = 4e-25
 Identities = 49/75 (65%), Positives = 60/75 (80%)
 Frame = +3

Query: 30  NSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 209
           N ALKDF +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGGQP WHHL CF +
Sbjct: 105 NLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQ 164

Query: 210 CRNELLYFAGGENLP 254
            R+EL +FA GE++P
Sbjct: 165 LRSELGWFASGEDMP 179



 Score = 65.7 bits (153), Expect = 6e-11
 Identities = 27/52 (51%), Positives = 34/52 (65%)
 Frame = +1

Query: 523 FDRLADCMTFGALETCPECKHGQLVVDTLGYKCTGNLSEWTKCTYQTDKPKR 678
           FD+ AD +TFGA+E+C EC   Q +V+  GY C GN SEWTKC     +P R
Sbjct: 270 FDQTADLLTFGAIESCSECNSCQFIVNKSGYICNGNHSEWTKCNKLLKEPTR 321



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 48  FKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 209
           +  EY+++ RATC  C+  I KD +RI  ++       K    P W H  CF K
Sbjct: 7   YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKV---PNWFHKTCFFK 57


>AF051548-1|AAC24518.1|  994|Drosophila melanogaster
           poly(ADP-ribose) polymerase protein.
          Length = 994

 Score =  112 bits (270), Expect = 4e-25
 Identities = 49/75 (65%), Positives = 60/75 (80%)
 Frame = +3

Query: 30  NSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 209
           N ALKDF +EY+KSSR+TC  CE KI KD +R+ K +YDTEVGMKYGGQP WHHL CF +
Sbjct: 105 NLALKDFGIEYAKSSRSTCRGCEQKINKDLVRLRKTVYDTEVGMKYGGQPLWHHLECFAQ 164

Query: 210 CRNELLYFAGGENLP 254
            R+EL +FA GE++P
Sbjct: 165 LRSELGWFASGEDMP 179



 Score = 65.7 bits (153), Expect = 6e-11
 Identities = 27/52 (51%), Positives = 34/52 (65%)
 Frame = +1

Query: 523 FDRLADCMTFGALETCPECKHGQLVVDTLGYKCTGNLSEWTKCTYQTDKPKR 678
           FD+ AD +TFGA+E+C EC   Q +V+  GY C GN SEWTKC     +P R
Sbjct: 270 FDQTADLLTFGAIESCSECNSCQFIVNKSGYICNGNHSEWTKCNKLLKEPTR 321



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 48  FKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 209
           +  EY+++ RATC  C+  I KD +RI  ++       K    P W H  CF K
Sbjct: 7   YLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKV---PNWFHKTCFFK 57


>AY047557-1|AAK77289.1|  555|Drosophila melanogaster GH07062p
           protein.
          Length = 555

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 535 ADCMTFGALETCPECKHGQ---LVVDTLGYKCTGNLSEW 642
           A C+      TCP C+H Q   LV D++  +C G  S W
Sbjct: 273 ASCLMKWGDSTCPVCRHVQTPGLVEDSVCMECEGTDSLW 311


>AF080444-1|AAD29852.1|  268|Drosophila melanogaster
           pugilistDominant protein.
          Length = 268

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = -2

Query: 377 LSTLFRLLLHSSIFLLECQGFQVVLSPFSQLSDLLS*DHQIWKILSSSEVQKFISAFNET 198
           LS+LF LL  SS+F L    F ++ S FS LS L S    ++ +LSS  +   +S+    
Sbjct: 182 LSSLFSLL--SSLFSLLSSLFSLLSSLFSLLSSLFSLLSSLFSLLSS--LFSLLSSLFSL 237

Query: 197 RQVVPSWLSTIF 162
              + S LS++F
Sbjct: 238 LSXLFSLLSSLF 249


>AE014297-2639|AAF55646.2|  555|Drosophila melanogaster CG5555-PA
           protein.
          Length = 555

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 535 ADCMTFGALETCPECKHGQ---LVVDTLGYKCTGNLSEW 642
           A C+      TCP C+H Q   LV D++  +C G  S W
Sbjct: 273 ASCLMKWGDSTCPVCRHVQTPGLVEDSVCMECEGTDSLW 311


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,872,428
Number of Sequences: 53049
Number of extensions: 521203
Number of successful extensions: 1233
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)