Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20070
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribo...    44   8e-05
AC024200-15|AAF36011.1|  945|Caenorhabditis elegans Poly(adp-rib...    44   8e-05
Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    32   0.33 
AL117195-18|CAB55029.1|  490|Caenorhabditis elegans Hypothetical...    29   3.0  
Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine rece...    28   7.0  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    28   7.0  

>AF499444-1|AAM27195.1|  945|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-1 protein.
          Length = 945

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +1

Query: 517 ECFDRLADCMTFGALETCPECKHGQLVVDTL--GYKCTGNLSEWTKCTYQTDKPKR 678
           +  +RL D   FG    C  C +G++V ++    Y CTG  +E++KCTY++  P R
Sbjct: 312 QVIERLVDNALFGCPIICQTCSNGKIVYNSSCRTYVCTGYATEYSKCTYESKNPIR 367


>AC024200-15|AAF36011.1|  945|Caenorhabditis elegans
           Poly(adp-ribose) metabolism enzymeprotein 1 protein.
          Length = 945

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +1

Query: 517 ECFDRLADCMTFGALETCPECKHGQLVVDTL--GYKCTGNLSEWTKCTYQTDKPKR 678
           +  +RL D   FG    C  C +G++V ++    Y CTG  +E++KCTY++  P R
Sbjct: 312 QVIERLVDNALFGCPIICQTCSNGKIVYNSSCRTYVCTGYATEYSKCTYESKNPIR 367


>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -2

Query: 494 VNCTPKFFLHLFYLYSLKHFYVYQTIXXXXXXXXXVLCPLSTLFRLLLHS--SIFLLECQ 321
           ++C P+FFLHLF LY   +F+               +     +F L+L S  +IFL+  +
Sbjct: 72  IHCVPRFFLHLFDLY--YYFFGVDCYDMQPSSLRCFILRFPYMFGLILSSTTTIFLMIER 129

Query: 320 GFQVVLS 300
           GF    S
Sbjct: 130 GFATYYS 136


>AL117195-18|CAB55029.1|  490|Caenorhabditis elegans Hypothetical
           protein Y57A10A.25 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -2

Query: 443 KHFYVYQTIXXXXXXXXXVLCPLSTLFRLLLHSSIFLLECQGFQVVLSPFSQLSDL 276
           KH + +  +           CPL TLFR LL SS       GF  +   + QL D+
Sbjct: 140 KHSFDFNRLIQSGVRFQGANCPLKTLFRELLGSSATFCLHNGFIDLAFIYKQLYDI 195


>Z82080-4|CAC70117.1| 1125|Caenorhabditis elegans Hypothetical
           protein W09G3.6 protein.
          Length = 1125

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 63  SKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGG 173
           + S  A CP+CE+ +   E R+C   + T  GM   G
Sbjct: 827 TSSQEAICPKCEMSLSTVE-RVCSDAWKTANGMAEDG 862


>U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein72 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 300 SVFTII*SAFLRSSNLEDSLLQRSTEVHFCI*RNKASGAILVVHH 166
           + FT+I S  + S +  D L+     + + +     S AIL+VHH
Sbjct: 269 AAFTLIPSVLISSRSAPDQLVNNLVSISYAVHIVVGSLAILLVHH 313


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 428  KHRNALMNTNKKDVEKILEYNLQGIPTERLSVLIV*QIV 544
            K+R  L NT K+++EK+   N   +P  R  + I  +++
Sbjct: 2250 KYRRELANTEKQEIEKMKIMNKHWMPALRKKIRIARKVI 2288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,292,006
Number of Sequences: 27780
Number of extensions: 285514
Number of successful extensions: 845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)