Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20070
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    27   0.22 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.2  

>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 102 KICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVKCRNELL 227
           K C  +I I + L D   GM+ G  P  H L C+  C  +LL
Sbjct: 38  KSCLQKIAITEELVD---GMRRGEFPDDHDLQCYTTCIMKLL 76


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 12  AAPESDNSALKDFKVEYSKS 71
           AAP   NS +K + +EY  S
Sbjct: 897 AAPYDGNSPIKRYVIEYKIS 916


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 492 KLYSKIFSTSFLFVFIKAFLCLSNNL 415
           +L  ++  T+ + +  +AF CL NNL
Sbjct: 142 QLGQEVIYTACVGLLERAFRCLGNNL 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,262
Number of Sequences: 438
Number of extensions: 3502
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)