Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20070
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ... 49 3e-06
At5g22470.1 68418.m02621 poly (ADP-ribose) polymerase family pro... 41 7e-04
At3g14890.2 68416.m01883 phosphoesterase identical to phosphoest... 38 0.005
At3g14890.1 68416.m01882 phosphoesterase identical to phosphoest... 38 0.005
At4g18290.1 68417.m02714 inward rectifying potassium channel (KA... 28 6.5
At4g15870.1 68417.m02412 terpene synthase/cyclase family protein 28 6.5
At1g16160.1 68414.m01936 protein kinase family protein contains ... 28 6.5
At1g79680.1 68414.m09293 wall-associated kinase, putative simila... 27 8.6
>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
NAD(+) ADP-ribosyltransferase, putative /
poly[ADP-ribose] synthetase, putative similar to
poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
contains Pfam profiles PF00644: Poly(ADP-ribose)
polymerase catalytic domain, PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region, PF02877:
Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
BRCA1 C Terminus (BRCT) domain
Length = 983
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +1
Query: 526 DRLADCMTFGALETCPECKHGQLVVDTLGYKCTGNLSEWTKCTYQTDKPKR 678
D+ AD M FG L CP C G L Y+C G +SEW+KC++ T P R
Sbjct: 292 DKCADGMMFGPLALCPMCS-GHLSFSGGLYRCHGYISEWSKCSHSTLDPDR 341
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 30 NSALKDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 209
N+A ++ +E S++SRA C +C KI K E+RI + G G WHH CF++
Sbjct: 108 NNAKLEYGIEVSQTSRAGCRKCSEKILKGEVRI----FSKPEGPGNKGL-MWHHAKCFLE 162
Query: 210 CRN--ELLYFAGGENLPD 257
+ EL +G ++PD
Sbjct: 163 MSSSTELESLSGWRSIPD 180
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = +3
Query: 42 KDFKVEYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCFVK 209
K ++ EY+KSSR++C C+ I K+ R+ K++ T G P W+H C +K
Sbjct: 6 KPWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFD---GIMPMWNHASCILK 58
>At5g22470.1 68418.m02621 poly (ADP-ribose) polymerase family
protein similar to poly(ADP)-ribose polymerase [Zea
mays] GI:3928871; contains Pfam profiles PF00644:
Poly(ADP-ribose) polymerase catalytic domain, PF00533:
BRCA1 C Terminus (BRCT) domain, PF05406: WGR domain
Length = 815
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 538 DCMTFGALETCPECKHGQLVVDT-LGYKCTGNLSEWTKCTYQTDKPKR 678
D + +GAL CP C G L+ D + C G +SEW C + T P R
Sbjct: 101 DLLFYGALAKCPLCG-GTLICDNEKRFVCGGEISEWCSCVFSTKDPPR 147
>At3g14890.2 68416.m01883 phosphoesterase identical to
phosphoesterase [Arabidopsis thaliana] GI:21630064;
contains Pfam profile PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region
Length = 638
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 57 EYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCF 203
EY+KSSR+TC +C I E+R+ + + + +WHHL CF
Sbjct: 275 EYAKSSRSTCKKCSQTIAAKELRLGLVTRN----FRGFDMKQWHHLGCF 319
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 57 EYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCF 203
EY+KS+R++C C KI +R+ I G RWHH CF
Sbjct: 6 EYAKSNRSSCRSCSNKIAVKSLRLGLI----SKGRGGVDMTRWHHFDCF 50
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 63 SKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCF 203
+KSSR++C C I ++R+ + D+ G RWHHL CF
Sbjct: 124 AKSSRSSCNRCSQTIVSKDLRVGLVTEDSR-GFDI---TRWHHLGCF 166
>At3g14890.1 68416.m01882 phosphoesterase identical to
phosphoesterase [Arabidopsis thaliana] GI:21630064;
contains Pfam profile PF00645: Poly(ADP-ribose)
polymerase and DNA-Ligase Zn-finger region
Length = 694
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 57 EYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCF 203
EY+KSSR+TC +C I E+R+ + + + +WHHL CF
Sbjct: 331 EYAKSSRSTCKKCSQTIAAKELRLGLVTRN----FRGFDMKQWHHLGCF 375
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 57 EYSKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCF 203
EY+KS+R++C C KI +R+ I G RWHH CF
Sbjct: 53 EYAKSNRSSCRSCSNKIAVKSLRLGLI----SKGRGGVDMTRWHHFDCF 97
Score = 34.3 bits (75), Expect = 0.075
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 63 SKSSRATCPECEIKICKDEIRICKILYDTEVGMKYGGQPRWHHLPCF 203
+KSSR++C C I ++R+ + D+ G RWHHL CF
Sbjct: 170 AKSSRSSCNRCSQTIVSKDLRVGLVTEDSR-GFDI---TRWHHLGCF 212
>At4g18290.1 68417.m02714 inward rectifying potassium channel (KAT2)
identical to inward rectifying K+ channel [Arabidopsis
thaliana] gi|12666980|emb|CAC28122; Shaker-type channel
(1P/6TM), PMID:11500563
Length = 697
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 105 F*FHIQGMWPYCFSNIQL 52
F FH Q +PYC SNIQ+
Sbjct: 600 FEFHSQEAYPYCRSNIQI 617
>At4g15870.1 68417.m02412 terpene synthase/cyclase family protein
Length = 598
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = +1
Query: 517 ECFDRLADCM--TFG-ALETCPECKHGQLVVDTLGYKCTGNLSEW 642
+C D L D M F A T EC++ ++ + L Y G L EW
Sbjct: 387 DCMDSLPDYMKTVFKFAWNTFEECENAGIMEEGLSYDVQGALEEW 431
>At1g16160.1 68414.m01936 protein kinase family protein contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 711
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 442 FNEYK*KRCRKNFGVQFTGNPYRKTECFDRLADCMTFGALETCPECKHGQLVVDTLGYKC 621
F+E + C + G FTGNPY + C D DC C+ G V GY+C
Sbjct: 272 FSEMSYRNCYCSLG--FTGNPYLRGGCIDN-DDCKGPNI------CEEGTCVNVPGGYRC 322
>At1g79680.1 68414.m09293 wall-associated kinase, putative similar
to wall-associated kinase 2 GI:4826399 from [Arabidopsis
thaliana]
Length = 769
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 490 FTGNPYRKTECFDRLADCMTFGALETCPECKHGQLVVDTLGYKC 621
F GNPY EC D + +C+ ++ P C G+ V GY C
Sbjct: 311 FEGNPYIPGECKD-INECVR--GIDGNPVCTAGKCVNLLGGYTC 351
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,972
Number of Sequences: 28952
Number of extensions: 252232
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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