Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20069
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   3.5  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    24   4.6  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    24   6.1  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    24   6.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    23   8.1  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 91  AYDEGVKKYK*QKFVVRFLKINK 23
           AY+  V  Y+ + F++R L INK
Sbjct: 788 AYEGAVYVYQGKTFIIRLLNINK 810


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 105 YFXKLHMMKELKSTSNKSLLSVFSKLTNCIIS 10
           YF + H   +  S SN+  L+VF + T+  +S
Sbjct: 170 YFPRPHRSSKNLSVSNRLQLAVFKETTSSTLS 201


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 2   DEGDMIQFVNFEKTDNKLLLLVLFNSFII 88
           DEGD +  + FE+T  K+L  +   S II
Sbjct: 301 DEGDRLMDMGFEETLTKILSYLESQSSII 329


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 69  STSNKSLLSVFSKLTNCIISPSS 1
           +TSN  L S+FS L++ I   SS
Sbjct: 671 ATSNSQLSSIFSNLSSSISDASS 693


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 97  EIAYDEGVKKYK*QKFVVRFLKINKLYHIPF 5
           E A D     Y   + ++RFL+++ L  IP+
Sbjct: 387 ENALDASAFHYSVYRIILRFLRMDGLMEIPY 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,130,929
Number of Sequences: 5004
Number of extensions: 17603
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)