Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20069
         (312 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0732 - 35788417-35788485,35788776-35788871,35788963-357891...    26   5.4  
10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636...    26   7.2  
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    25   9.5  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    25   9.5  

>03_06_0732 -
           35788417-35788485,35788776-35788871,35788963-35789148,
           35789898-35789959,35790063-35790304,35790418-35791517
          Length = 584

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 59  LLVLFNSFIICNFXK*PLTRRHGGWVKMTRDVFVSLQ 169
           +L  +N+F I       ++ +HGGW     DV  S+Q
Sbjct: 68  ILERYNNFKISGMPVRVMSHQHGGWRDFPEDVVNSVQ 104


>10_08_1003 -
           22162526-22163155,22163305-22163448,22163565-22163692,
           22163794-22164066,22164416-22164689
          Length = 482

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
 Frame = +1

Query: 85  HMQFXKIAFNPASWG-----LGQNDPRR 153
           H Q  KI+  P SWG     +G+ DPRR
Sbjct: 18  HQQVKKISRIPFSWGAHAWGIGREDPRR 45


>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 8   GDMIQFVNFEKTDNKLLLLVLFNSFIICNFXK*PLTRRHGGWVKMTR 148
           G M +  NF   DN++L LVLF  F +C+     L RR  G  ++ R
Sbjct: 408 GGMERAFNF--ADNQVLRLVLFIVF-VCSRLACALLRRRRGRARLRR 451


>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
            18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 168  CKLTKTSRVILTQPP*RRVKGYFXKLHMMKELKSTSNKSLLSVFSKLTN 22
            C+ T T+ VIL  P    +      L  +K L+ TSN SL S+   + N
Sbjct: 1114 CQGTLTTLVILGCPSFSSLPASIRCLSNLKSLELTSNNSLTSLPEGMQN 1162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,017,689
Number of Sequences: 37544
Number of extensions: 107721
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)