Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20069
         (312 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_30456| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_25079| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_25038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1643

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 290  LVTVSSKHGRSILXNCXQCLEEAIN 216
            L+ ++ KHG++++ +C  CL   +N
Sbjct: 1067 LMRLTVKHGQTVVQSCVSCLGAVVN 1091


>SB_30456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 79  LHHMQFXKIAFNPASWGLGQND 144
           L H    K  +  ASWGLG+ D
Sbjct: 78  LQHSAILKTKYRVASWGLGKRD 99


>SB_25079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 119 RHGGWVKMTRDVFVSLQI 172
           R+GGWV +  D++  LQ+
Sbjct: 242 RYGGWVALVNDMYQFLQV 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,388,978
Number of Sequences: 59808
Number of extensions: 128956
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)