Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20069
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna syn...    26   4.8  
U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna syn...    26   4.8  
Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.        25   8.4  

>U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform b protein.
          Length = 454

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 120 VMGVGSK*PETFLLAYRFVITQVTML-YFSIAGIY 221
           ++GVG+K  + +   Y  VIT+  M+ Y+ ++G Y
Sbjct: 88  LLGVGTKKDDNYSEWYSEVITKAEMIEYYDVSGCY 122


>U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform a protein.
          Length = 581

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 120 VMGVGSK*PETFLLAYRFVITQVTML-YFSIAGIY 221
           ++GVG+K  + +   Y  VIT+  M+ Y+ ++G Y
Sbjct: 88  LLGVGTKKDDNYSEWYSEVITKAEMIEYYDVSGCY 122


>Z67883-1|CAA91805.1|  415|Caenorhabditis elegans Hypothetical
           protein K02A4.1 protein.
          Length = 415

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 93  LHMMKELKSTSNKSLLSVFSKLTNCIISP 7
           L+M +  K+ S K L  +F   T C++SP
Sbjct: 334 LNMEEVKKALSEKRLYEMFGSGTACVVSP 362


>U21550-1|AAC47236.1|  378|Caenorhabditis elegans ECA39 protein.
          Length = 378

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 93  LHMMKELKSTSNKSLLSVFSKLTNCIISP 7
           L+M +  K+ S K L  +F   T C++SP
Sbjct: 315 LNMEEVKKALSEKRLYEMFGSGTACVVSP 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,253,043
Number of Sequences: 27780
Number of extensions: 100162
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)