Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20067
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5CLT0 Cluster: Putative uncharacterized protein; n=2; ...    35   2.2  
UniRef50_Q8VB34 Cluster: Wsv164; n=1; Shrimp white spot syndrome...    33   8.8  
UniRef50_Q97GP8 Cluster: Membrane protein of EXOQ family, involv...    33   8.8  
UniRef50_Q8VQE3 Cluster: Histidine kinase sensor protein; n=2; B...    33   8.8  
UniRef50_Q38CX6 Cluster: Putative uncharacterized protein; n=1; ...    33   8.8  

>UniRef50_Q5CLT0 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium hominis
          Length = 659

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 24/85 (28%), Positives = 43/85 (50%)
 Frame = -1

Query: 340 NLICHYNICLLLKILHSNLSSNLVDLQIDGIVREHIFEIILNS*SNLFLHISSKYF*FTY 161
           N+  HYN  +   I    L S++VD   + +VREHI  +++N   +  +++ + +    Y
Sbjct: 462 NISNHYNKQISDSINWKQLISSIVDNTQNILVREHINTMLINFLFDAIINMLNPWISLFY 521

Query: 160 *RYCIINSNLVMLNIFSSITSI*YC 86
               IINS L +++    I +I  C
Sbjct: 522 QASFIINSYLSIISFLLVIVAILVC 546


>UniRef50_Q8VB34 Cluster: Wsv164; n=1; Shrimp white spot syndrome
           virus|Rep: Wsv164 - White spot syndrome virus (WSSV)
          Length = 64

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = -2

Query: 495 IFK*NLLFQIFMLKLILKHEYTCIFFLFFPATFFSVCLYFPFLIIYYKDSPVT 337
           +F  N+L   F+L +     +T +FFLFFP  F      FPFL  +   S  T
Sbjct: 1   MFVFNILL-FFLLSIFFFFLFT-LFFLFFPLLFLPFPFLFPFLFFFITSSSST 51


>UniRef50_Q97GP8 Cluster: Membrane protein of EXOQ family, involved
           in exopolysaccharide production; n=1; Clostridium
           acetobutylicum|Rep: Membrane protein of EXOQ family,
           involved in exopolysaccharide production - Clostridium
           acetobutylicum
          Length = 406

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = -2

Query: 480 LLFQIFMLKLILKHEYT--CIFFLFFPATFFSVCLYFPFLII---YYKDSPVT*SAIITF 316
           ++F +F+++++   +    C + +    T F + L F  ++I   Y K+ P+     + F
Sbjct: 42  VIFVLFLVEILRNRQKLKECFYIMLGDKTLFCLILLFIVMMISVTYAKEKPLALEESLRF 101

Query: 315 VCYLKYYIV 289
            CY+  YI+
Sbjct: 102 FCYIGLYII 110


>UniRef50_Q8VQE3 Cluster: Histidine kinase sensor protein; n=2;
           Bacillus mojavensis|Rep: Histidine kinase sensor protein
           - Bacillus mojavensis
          Length = 577

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 483 NLLFQIFMLKLILKHEYTCIFFLFFPATFFSVCLYFPFLIIYYKDS 346
           NL+F++F  +L  +H    I  L F  +F  V +YF  ++I  KD+
Sbjct: 217 NLVFELFRTQLFFRHYVPKINLLSFFISFIIVSVYFGSILIKSKDT 262


>UniRef50_Q38CX6 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 100

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 20/93 (21%), Positives = 40/93 (43%)
 Frame = -2

Query: 477 LFQIFMLKLILKHEYTCIFFLFFPATFFSVCLYFPFLIIYYKDSPVT*SAIITFVCYLKY 298
           L+ + ++ +I+ H +TC F LF P     +C +     + +       + I+  + Y+  
Sbjct: 7   LYVVIIIIIIITHAHTCSFPLFLPFVCLFICRFIFIFALAFVILFCLFAFILILLLYIYL 66

Query: 297 YIVT*VQI**IYK*TELFGNIFLKSFLIRDQIY 199
           YI   + I        L  ++  +S L   Q+Y
Sbjct: 67  YIYIYIYIIIYENICVLLPSLLQRSILFLSQLY 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,284,344
Number of Sequences: 1657284
Number of extensions: 10316733
Number of successful extensions: 21961
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21924
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)