Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20067
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   4.5  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   4.5  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   7.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   7.9  

>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 212 VIKFISSYFLKVFLIHILKILYHKFKLGYAQYI 114
           VI  +  +FL  +L H+ +I+Y+ F    A Y+
Sbjct: 407 VITKVPLHFLPTWLRHVSRIVYYMFSKTSASYV 439


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 154 YCIINSNLVMLNIFSSITSI*YCQL*ARSYELWRLEVRKIN 32
           +C++  N ++   FSS+ SI Y     R YE+  + +   N
Sbjct: 13  HCLLKKNFLLTIRFSSLVSIQYIPFSNRLYEIISIALNPCN 53


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 179 VFLIHILKILYHKFKLGYAQYIFFNYLNIVLSAVSTFIRI 60
           VF++ ++  +Y  F+LG   ++  +YL      + T IRI
Sbjct: 470 VFIVSVILSIY--FQLGSTYWVTLSYLCTFTCCIMTIIRI 507


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/54 (20%), Positives = 24/54 (44%)
 Frame = -2

Query: 471 QIFMLKLILKHEYTCIFFLFFPATFFSVCLYFPFLIIYYKDSPVT*SAIITFVC 310
           ++ + + +L   +  +FFL F  +F  +       I+Y+   P+       F+C
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLC 162


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -3

Query: 164  ILKILYHKFKLGYAQYIFFNYLNIVLSAVSTFIR 63
            +++I+  +F +     I +  LNI+LS +STF+R
Sbjct: 2290 LIRIIGERFPVEVKCAILYT-LNIILSKISTFLR 2322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,199
Number of Sequences: 5004
Number of extensions: 50539
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)