Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20067
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97003-1|AAB52270.2|  527|Caenorhabditis elegans Udp-glucuronosy...    32   0.45 
U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U23514-2|AAM48532.1|  418|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81463-3|CAB03847.1|  307|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U97003-1|AAB52270.2|  527|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein32 protein.
          Length = 527

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 12/29 (41%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
 Frame = -3

Query: 215 FVIKFISSYFLK-VFLIHILKILYHKFKL 132
           F+ KF+++YF+  VFL+ + K+++ KF+L
Sbjct: 495 FIFKFLTNYFIPVVFLLCVTKLIFSKFQL 523


>U23514-3|AAC46542.2|  421|Caenorhabditis elegans Hypothetical
           protein F48E8.7a protein.
          Length = 421

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -1

Query: 361 LLQRFTRNLICHYNICLLLK---ILHSNLSSNLVDLQIDGIVREHIFEIILNS*SNLFLH 191
           +L +F R      N C  L    ++H N   +LV L + G V +   E+ L   SN  L 
Sbjct: 333 ILNKFPRLTTISLNRCYGLDPNMVVHFNSKPSLVYLNVHGCVSDTNMELFLEMCSN--LK 390

Query: 190 ISSKYF*FT 164
           ++ +YF FT
Sbjct: 391 VNRQYFNFT 399


>U23514-2|AAM48532.1|  418|Caenorhabditis elegans Hypothetical
           protein F48E8.7b protein.
          Length = 418

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -1

Query: 361 LLQRFTRNLICHYNICLLLK---ILHSNLSSNLVDLQIDGIVREHIFEIILNS*SNLFLH 191
           +L +F R      N C  L    ++H N   +LV L + G V +   E+ L   SN  L 
Sbjct: 330 ILNKFPRLTTISLNRCYGLDPNMVVHFNSKPSLVYLNVHGCVSDTNMELFLEMCSN--LK 387

Query: 190 ISSKYF*FT 164
           ++ +YF FT
Sbjct: 388 VNRQYFNFT 396


>Z81463-3|CAB03847.1|  307|Caenorhabditis elegans Hypothetical
           protein C06B8.4 protein.
          Length = 307

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 210 DQIYFFIFPQSIFNSHIKDIVS*IQTWLCSIYF 112
           DQ+YFF FP S+  + I   ++ +  WL +++F
Sbjct: 116 DQLYFFTFPYSLIFTGIFSFMT-LNWWLSAVFF 147


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -2

Query: 504 KKKIFK*NLLFQIFMLKLILKHEYTCIFFLFFPATFFSVCLYFPFLI 364
           + +IF   L FQIF   L+    Y C F  F   T ++   +F F++
Sbjct: 226 QNRIFLQGLTFQIFGHILVYVPIYICTFISFITKTEYTFSQFFIFVL 272


>Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.11 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 244 EQFRLFVNLLNLNSGYYVIF*VTNKCYNGRLSYG*IFVI 360
           E+ RLF ++    S + ++F V  + YN +L Y   FV+
Sbjct: 184 ERSRLFASIYTFISSFNLVFSVLLRRYNKKLEYSTPFVV 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,947,550
Number of Sequences: 27780
Number of extensions: 275056
Number of successful extensions: 632
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)