Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20067
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30515.1 68414.m03733 expressed protein                             29   3.9  
At5g04220.2 68418.m00411 C2 domain-containing protein (sytC) GC ...    28   6.8  
At1g67630.1 68414.m07712 DNA polymerase alpha subunit B family c...    27   8.9  

>At1g30515.1 68414.m03733 expressed protein
          Length = 144

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -2

Query: 120 IYFLQLP--QYSTVSCEHVHTN 61
           IYFL  P  Q S+V+C+H+H N
Sbjct: 121 IYFLGYPKTQNSSVNCDHIHNN 142


>At5g04220.2 68418.m00411 C2 domain-containing protein (sytC) GC
           donor splice site at exon 3; similar to Ca2+-dependent
           lipid-binding protein (CLB1) GI:2789434 from
           [Lycopersicon esculentum]
          Length = 540

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 322 NICLLLKILHSNLSSNLVDLQIDGIVR 242
           NI L+LK+L   +   LVDLQ   IVR
Sbjct: 153 NIVLVLKVLSLRIRVQLVDLQFFAIVR 179


>At1g67630.1 68414.m07712 DNA polymerase alpha subunit B family
           contains Pfam profile: PF04058 DNA polymerase alpha
           subunit B
          Length = 620

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 216 IRDQIYFFIFPQSIFNSHIKDI 151
           IRD  + FIFPQ  F+ HI D+
Sbjct: 448 IRDANHDFIFPQPPFDIHIPDL 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,373,151
Number of Sequences: 28952
Number of extensions: 224725
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)