Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20066
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57561| Best HMM Match : fn3 (HMM E-Value=0)                         29   3.0  
SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)                 29   5.3  
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)                   28   7.0  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1614

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 385  DVQGDDGRPAYGDGKDKTSPRVSWKLIALWENNKVYF-KILNMNVTNTWYWESALTGTAT 561
            DV        YG+G   TS  ++W+ + + + N +     +N+ + +T    S L    T
Sbjct: 859  DVPDSPPLSLYGEGPTPTSLSLTWQPVPIPQRNGIILGYTVNIRLNDTSLDNSTLLWNTT 918

Query: 562  IWPSESIASI 591
            + P  +I S+
Sbjct: 919  VLPDAAILSL 928


>SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +2

Query: 158 SKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAFNFGSRAPRTSSGIVSQLSSDLSSPKTR 337
           S+ L +EKK E ++ +    + N K + + +  NF +  P   S    +L ++ +S  + 
Sbjct: 224 SQRLEKEKKKEWVSCIKKTEVTNRKRSLVSFLRNFATGNPFFPSFFHYELPAEEASGTST 283

Query: 338 LSLCTSATVSL 370
             L T   VSL
Sbjct: 284 GRLITRCQVSL 294


>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
          Length = 306

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/98 (21%), Positives = 46/98 (46%)
 Frame = +2

Query: 77  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAF 256
           S++  +++  +  NS + + +     + +  +E +K E+   ++++          E++ 
Sbjct: 36  SELREEVILLRKENSQIESTFVEKNAELRQHFEIEKEELNRKLIHEKEELRYSLEAEFSQ 95

Query: 257 NFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL 370
            F + +  T SG++ QL  DL   KTR     SA + L
Sbjct: 96  KFVNESA-TQSGVIQQLDGDLRMMKTRCGELESAMLEL 132


>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
          Length = 638

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 432 QDKPESQLEVNRSVGEQQGLLQDLEHERNQY 524
           + KP S    NR+ G ++G +QD   +R  Y
Sbjct: 354 ESKPSSSSSKNRNTGLERGRVQDFGRDRRDY 384


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 72  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 203
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,858,314
Number of Sequences: 59808
Number of extensions: 392395
Number of successful extensions: 1179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)