Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20066
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.5  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.5  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    29   2.6  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 134 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 244
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 134 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 244
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 172 RGEEERSHHKCREQTDTK---QQDELHGVRLQLWLQGSKDIVRDCFPVEFRLIFA 327
           R EE+    K R QT T+   Q+ E+    L++ L+ S+D+ RDC  ++    FA
Sbjct: 41  RIEEKVLEIKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVCIDMDAYFA 95


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 260 FGSRAPRTSSGIVSQLSSDL--SSPKTRLSLCTSATVS 367
           FG  APRT SG + Q S++L  S+PKT       A++S
Sbjct: 145 FGVLAPRTLSGSIPQTSTNLEDSTPKTSTGGRFGASIS 182


>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 272 APRTSSGIVSQLSSDLSSPKTRLSLCTSATVS 367
           A + SSG+VSQ+SS  SS + R +L   ++ S
Sbjct: 91  AVKNSSGLVSQISSTTSSERKRRTLARPSSSS 122


>U13019-4|AAC24451.1|  222|Caenorhabditis elegans Hypothetical
           protein T12A2.15b protein.
          Length = 222

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 421 DGKDKTSPRVSWKLIALWENNKVYFKILNMNVTNT 525
           D KD+ +P VS KL+AL + NK  FK       NT
Sbjct: 120 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 153


>U13019-3|AAC24452.2|  713|Caenorhabditis elegans Hypothetical
           protein T12A2.15a protein.
          Length = 713

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +1

Query: 421 DGKDKTSPRVSWKLIALWENNKVYFKILNMNVTNT 525
           D KD+ +P VS KL+AL + NK  FK       NT
Sbjct: 611 DKKDQCNPYVSVKLVAL-DGNKEVFKKKTPTAKNT 644


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,191,203
Number of Sequences: 27780
Number of extensions: 289718
Number of successful extensions: 1000
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)