Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20065
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    29   0.62 
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        28   1.4  
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    26   4.4  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   5.8  
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    25   7.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.7  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +2

Query: 308 SKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFCTSKLEVCYIEANGFYLGK 460
           + G P I+  +  ++ P   +     + +   C+  L VC+  A+G ++GK
Sbjct: 133 ASGIPTIKAILSGYKYPDMNV----FFSIKTLCSKSLAVCFSVASGLWVGK 179


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +2

Query: 248 KIKRSIIELKENGQAILNGASKGFPIIEKDVFAFRQP-SNRIGVGSLYGLMVFCTSKLEV 424
           K +  ++ +  NG+ +L+ AS  F  + K V     P  N   +       +FCTS L  
Sbjct: 60  KSQEEMVSVSRNGKQLLSEAS--FFRLGKHVHLNFLPFENTFEMALRNDFQIFCTSILFT 117

Query: 425 CYIEA 439
           CYI++
Sbjct: 118 CYIQS 122


>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 251 IKRSIIELKENGQAILNGASKGFPIIEKDVFAF 349
           ++RS + LKE+G      AS+G P++ + V  F
Sbjct: 120 VQRSKMLLKESGSLGAYSASQGIPLVRRHVADF 152


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 248 KIKRSIIELKENGQAILNGASKGFPIIEKDVFAFRQ 355
           K +R I++ K  GQ+ LN        +EK+V  F++
Sbjct: 180 KREREILQNKNQGQSTLNSLKDRQQALEKEVNIFKE 215


>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 589 HLWTAAGQTVTRYRTRFPKCRSF 521
           HLW     ++T+ RT+F K +S+
Sbjct: 81  HLWQKQINSITQMRTKFDKTKSW 103


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +2

Query: 65  LDECRLSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSIETS 199
           L    +SS+    +  TSS ST+++S S  + +++  TT+S ++S
Sbjct: 321 LSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSS 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,163
Number of Sequences: 5004
Number of extensions: 55781
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)