Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20065
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0113 + 41158666-41159615,41159695-41160076                       31   0.84 
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    30   2.0  
02_05_1225 + 35060642-35060815,35061254-35061802,35062284-350623...    28   6.0  
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540...    28   7.9  
04_04_1359 - 32886181-32886789                                         28   7.9  
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115...    28   7.9  

>01_07_0113 + 41158666-41159615,41159695-41160076
          Length = 443

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 313 FGSSVQNSLSIFFQFDDTPLYLPK*EPW 230
           FGS+    L +F  F DTP+YLP   P+
Sbjct: 200 FGSTFALCLPVFATFGDTPVYLPNYNPY 227


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 114 HLHVRRSPPHLPRKLSLRIGARPRR*KLHAANPTSKR 224
           H H   +PPHL R+    + A P R  LH   PT  R
Sbjct: 20  HRHHPAAPPHLLRQRRGSVAATPLRLGLHLPTPTPLR 56


>02_05_1225 +
           35060642-35060815,35061254-35061802,35062284-35062348,
           35062417-35062957,35063321-35064610
          Length = 872

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 22  PGPSQSLQTS*HQPTRRMPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNFT 201
           P PS S  T   +    MPS+L+  +++    F  D +  +FP +    L HD + R  T
Sbjct: 491 PAPSSSWITGNFKEPSVMPSELKFRILDKAPEFNLDLKLDSFPDSSVLALRHDKLFRGGT 550


>08_02_1556 -
           27852247-27852738,27853005-27853197,27854006-27854070,
           27854161-27854199,27854572-27854592,27854819-27855052,
           27855420-27855504,27855953-27856026,27856516-27856647,
           27856735-27856834,27857296-27857361,27857472-27857509,
           27858013-27858219,27858378-27858427,27858871-27858940,
           27859065-27859133,27859456-27859530,27860456-27860530,
           27860887-27860934
          Length = 710

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 217 QNGKPKALILEDKAEYHRIERKWTGYSERSFQR 315
           Q   PK  +L+   EYHR+ RKW  +S   F++
Sbjct: 161 QKSDPKMRLLK---EYHRLFRKWFPHSGSEFEK 190


>04_04_1359 - 32886181-32886789
          Length = 202

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +2

Query: 458 KLRGLLGDGNNEPYDDFGYLMERSALRKASSVTRNRLARSCPQVQAPEHSHHQLHDASLP 637
           KL G  G G ++P      +M R  L++       RL  + PQ     H HH+L  + + 
Sbjct: 49  KLTGAPGSGGSKPAPA-APVMRRPKLQERRRAAPARLELARPQPLYYSHHHHRLMHSPVS 107

Query: 638 P 640
           P
Sbjct: 108 P 108


>01_06_0872 +
           32609792-32610178,32611262-32611387,32611477-32611550,
           32611944-32612013,32612088-32612143,32612236-32612307,
           32612384-32612478,32612660-32612726,32612809-32612938,
           32613135-32613350,32613461-32613591,32614044-32614218,
           32614292-32614382,32614653-32614810,32615059-32615247,
           32615551-32615564,32616003-32616228
          Length = 758

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 103 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDR 192
           NGQH+  +D R   F G  RY   H H+ R
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGR 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,805,447
Number of Sequences: 37544
Number of extensions: 393603
Number of successful extensions: 1195
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)