Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20065
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 40 0.001
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 38 0.010
SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.093
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.12
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 31 0.86
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07) 30 1.5
SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09) 29 2.6
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_8153| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43) 28 8.0
SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5) 28 8.0
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 109 QHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGK 228
+H TFDGRH+ F G C Y LA D + + + +QN K
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQNDK 261
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 112 HIFTFDGRHLTFPGNCRYVL 171
H +FDG+ TF G C+Y+L
Sbjct: 576 HFVSFDGKAFTFGGKCQYLL 595
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +1
Query: 76 PSKLRAVVVNGQHIFTFDGRHLTFPG----NCRYVLAHDHVDRNFTLLIQ 213
P A++ H+ TFD + FPG C YVLA D D FT++ Q
Sbjct: 1639 PFNSTAMIFGKPHVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMSQ 1688
>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 34.3 bits (75), Expect = 0.093
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +2
Query: 395 MVFCTSKLEVCYIEANGFYLGKLRGLLGDGNNEPYDDF 508
+V+ +++++V AN F +LRGL GD N E YD+F
Sbjct: 6 VVYMSNRIQV---HANPFLQNRLRGLCGDMNGEQYDEF 40
>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +2
Query: 431 IEANGFYLGKLRGLLGDGNNEPYDDF 508
+ AN F +LRGL GD N E YD+F
Sbjct: 1425 VHANPFLQNRLRGLCGDMNGEQYDEF 1450
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +1
Query: 76 PSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLA-HDH----VDRNFTLLIQLQNGKPKAL 240
P +V H TFD R + G C YVL+ H H + FT+ I++ + + L
Sbjct: 845 PCSGTCTMVGNSHFTTFDSRSYSMHGQCDYVLSEHCHFSNDTTKQFTIHIKISSDGSRQL 904
Query: 241 IL 246
I+
Sbjct: 905 IV 906
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 112 HIFTFDGRHLTFPGNCRYVLAHD 180
H TFDGR +F G C YV++ D
Sbjct: 33 HYKTFDGRLYSFQGGCNYVMSTD 55
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +1
Query: 214 LQNGKPKALILEDKAEYHRIERKWTGYSERSFQRIPDHRKGCVRFPSTKQQNRCWLIVRS 393
L +G P A + +K+ + R G S R+ + H K RF Q WL R
Sbjct: 2575 LGSGNPSAEDIRNKSSHVRDTWDRLGASLRTRTQQLQHNKEIQRFKREADQLEAWLNARE 2634
Query: 394 HGLL 405
H LL
Sbjct: 2635 HDLL 2638
>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
Length = 1033
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 117 LHVRRSPPHLPRKLSLRIGARPRR*KLHAANP 212
L VR+ PP L RKL+ R+ P+R L P
Sbjct: 978 LRVRKDPPPLKRKLAQRVAIPPKRIALGEVTP 1009
>SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 94 VVVNGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGKPKALILEDKAE 261
+ ++ HIF DG H FP + V AH + T I+L L+LE + E
Sbjct: 252 IAIHFSHIFAGDGFHFVFP-SLLQVYAHHQGNDMVTRAIELFASVAPILLLETRLE 306
>SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09)
Length = 1423
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 509 GYLMERSALRKAS---SVTRNRLARSCPQVQAPEHSHHQLHDASLPP 640
GY+ +S L S S+T R + C Q E S +LH++S PP
Sbjct: 1365 GYVDSKSKLCDLSPVNSITTGRWQQCCEYRQQSEESARELHESSPPP 1411
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 50 RSINPLDECRLSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSI 190
++INPL L+ ++ T +TS V+T+ S +W TTT++
Sbjct: 1226 KAINPLQIINLTKLVIGTTQSTSDIIYVSTTNSPVNSILFWLTTTTV 1272
>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = +2
Query: 74 CRLSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSIETSR 202
CR ++ T NTSS S V+T+ S TVA RT TS ++R
Sbjct: 135 CRDATVYRFVTYNTSSSSNVSTTRSPVTVA---RTITSQSSNR 174
>SB_8153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/48 (27%), Positives = 19/48 (39%)
Frame = +1
Query: 226 KPKALILEDKAEYHRIERKWTGYSERSFQRIPDHRKGCVRFPSTKQQN 369
+P ++ LE YH+ R W+ S+ R P V QN
Sbjct: 19 EPLSVALETFLRYHQSTRSWSAMDINSYARYPSRELAPVTIDGDSPQN 66
>SB_23902| Best HMM Match : Pkinase (HMM E-Value=2.29813e-43)
Length = 1602
Score = 27.9 bits (59), Expect = 8.0
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Frame = +2
Query: 110 NTSSRSTVATSPSQETVATYWRTTTSIETSRC*SNFKTENPRLLFWKIKRSIIELKENGQ 289
N + S T P++ TV+ + +C N +E+P + +S+ +L N
Sbjct: 134 NVTLPSVPPTDPAEATVSIIYCYQKRNPQRQCILNDGSESPEEVLIPAGKSLCDLITNAD 193
Query: 290 AILNGASKGFP-IIEKDVFAFRQPSNRIGVGSLYG 391
I G+ G P ++++ V P IG G YG
Sbjct: 194 -ISTGSGSGLPLLVQRTVARQITPIELIGSGR-YG 226
>SB_59529| Best HMM Match : BPL_C (HMM E-Value=7.5)
Length = 350
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +2
Query: 2 SGDFPDILALLRAYRPRSINPLDE----CRLSSALLL*TVNTSSRSTVATSPSQ 151
+GDF +IL + + +I+P ++ CR S + + VN+ T+AT+P Q
Sbjct: 268 NGDFLEILGMTNV-KALAISPANDSILVCREESMIYVYGVNSKDLGTIATNPWQ 320
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,578,691
Number of Sequences: 59808
Number of extensions: 449893
Number of successful extensions: 1294
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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