Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20065
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49912-2|CAA90138.1|  149|Caenorhabditis elegans Hypothetical pr...    30   1.8  
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical ...    29   2.3  
U40952-11|AAA81744.2|  280|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z74028-8|CAJ55251.1|  318|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z74028-7|CAA98426.2|  341|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoy...    27   9.4  

>Z49912-2|CAA90138.1|  149|Caenorhabditis elegans Hypothetical
           protein T24F1.4 protein.
          Length = 149

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 567 WPAAVHRCKRPNTPITSCTMHPSPPXC 647
           WP  VH    P T + +C  + SPP C
Sbjct: 41  WPICVHGRANPATKLCNCHNYYSPPFC 67


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical protein
            F44E2.4 protein.
          Length = 1283

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +2

Query: 44   RPRSINPLDECRLSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSIET 196
            +P  + P  E  LSS+ +   V+TSS S   ++P QET  T   TT + E+
Sbjct: 992  QPARVTPTLETVLSSSTM---VSTSSESDSESAPEQETEPTVPSTTETTES 1039


>AF003148-5|AAB54209.3|  792|Caenorhabditis elegans Hypothetical
           protein F32B5.7 protein.
          Length = 792

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 172 AHDHVDRNFT-LLIQLQNGKPKA-LILEDKAEYHRIERKWTGYSER 303
           + D +D N    L  L N + +A +IL  + +Y  I+ KW+G+S +
Sbjct: 571 SRDQLDNNLVPFLPHLSNAEERAFVILNKEGDYAIIKGKWSGFSRK 616


>U40952-11|AAA81744.2|  280|Caenorhabditis elegans Hypothetical
           protein C03B1.2 protein.
          Length = 280

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 590 APVDSCGPD-GYALPNSLSEVQIFPLGSRSHRKARCYRLREDREV 459
           AP  SC    GY++  + S V+   +  R +   RC++LR D  +
Sbjct: 93  APASSCQTSRGYSVKFTPSRVKRAKIPERMYNMKRCFQLRRDSRI 137


>Z74028-8|CAJ55251.1|  318|Caenorhabditis elegans Hypothetical
           protein C14C10.2b protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 218 KTENPRLLFWKIKRSIIELKENGQAILNGASKGF 319
           KTEN   L WK+K +  E+ +N ++IL G  + F
Sbjct: 264 KTENLEELMWKVKAN-REVSDNQKSILYGKIRHF 296


>Z74028-7|CAA98426.2|  341|Caenorhabditis elegans Hypothetical
           protein C14C10.2a protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 218 KTENPRLLFWKIKRSIIELKENGQAILNGASKGF 319
           KTEN   L WK+K +  E+ +N ++IL G  + F
Sbjct: 287 KTENLEELMWKVKAN-REVSDNQKSILYGKIRHF 319


>U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform b protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -1

Query: 285 PFSF-NSMILRFIFQNKSLGFSVLKLD*QREVSIDVVVRQYVATVSWEGEVATVEREDVL 109
           PF F + + +R  F  K     +  L  QRE + ++  R ++   +W  E    E E+ +
Sbjct: 11  PFRFLHKLPIRLTFTEKKSPLLISDLAKQREENDELKKRTHILECAWNQEHDDDEEEEEV 70

Query: 108 TVHNNSAE 85
            V   S E
Sbjct: 71  KVDQGSEE 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,125
Number of Sequences: 27780
Number of extensions: 327899
Number of successful extensions: 1278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)