Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20065
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14520.1 68418.m01702 pescadillo-related similar to pescadill...    30   1.6  
At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C...    29   3.8  
At3g13670.1 68416.m01722 protein kinase family protein contains ...    29   3.8  
At4g37710.1 68417.m05338 VQ motif-containing protein contains PF...    28   6.6  
At2g24680.1 68415.m02947 transcriptional factor B3 family protei...    28   6.6  
At4g09450.1 68417.m01555 myb family transcription factor contain...    27   8.7  

>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
           [Zebrafish, Danio rerio] SWISS-PROT:P79741
          Length = 590

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 240 KSLGFSVLKLD*QREV---SIDVVVRQYVATVSWEGEVATVEREDVLTVHN 97
           KSL F  LK    REV   S+ +V+  +   VSWEGE A  + +D    H+
Sbjct: 334 KSL-FKDLKFFLSREVPRESLQLVITAFGGMVSWEGEGAPFKEDDESITHH 383


>At5g51760.1 68418.m06418 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain; similar to protein phosphatase 2C (GI:10432446)
           [Nicotiana tabacum]
          Length = 416

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 247 EDKAEYHRIERKWTGYSERSFQRIPD 324
           E+ +E   +ERKW G  +RSF+R+ +
Sbjct: 180 EEGSENDVVERKWRGVMKRSFKRMDE 205


>At3g13670.1 68416.m01722 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 703

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +1

Query: 103 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGKPKALILEDKAEYHRIERK 282
           +GQH+  +D R   F G  RY  AH H+ R  +    L++     + L      HR    
Sbjct: 302 SGQHV-EYDQRPDMFRGTVRYASAHAHLGRTASRRDDLESLAYTLIFL------HRGRLP 354

Query: 283 WTGY 294
           W GY
Sbjct: 355 WQGY 358


>At4g37710.1 68417.m05338 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 123

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -3

Query: 454 QVEAVSFNVAHLKFRCAEDHETVQ--*ANTDSVAWLTESEHILFDDRESFGS-SVQNSLS 284
           +VE V+F V   +   A +HETVQ     T   A    S    FD   S+G  S QN  +
Sbjct: 60  RVEPVNFKVLVQRLTGAPEHETVQAKPLKTSDDAAKQSSSSFAFDPSSSWGDFSFQNPAN 119

Query: 283 I 281
           I
Sbjct: 120 I 120


>At2g24680.1 68415.m02947 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 851

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 190 RNFTLLIQLQNGKPKALILEDKAEYHRIE-RKWTGYSER-SFQRIPDHRKGCVRFPSTKQ 363
           ++FTL + L+NG P   ++  ++  H+ + R+ + +SE+ S   +P   K   +  S ++
Sbjct: 49  KSFTLELILENGTPMLSLVSTQSTSHKSQKRECSKHSEKESISAVPSKGKKNRKARSNRE 108

Query: 364 QNR 372
           + R
Sbjct: 109 ERR 111


>At4g09450.1 68417.m01555 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 200

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 266 IELKENGQAILNGASKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFC 406
           ++L E G++  NG   G P  E++   F +  N+ G G    +  +C
Sbjct: 74  VKLTEAGESKGNGKKTGIPWSEEEQRLFLEGLNKFGKGDWKNISRYC 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,880,110
Number of Sequences: 28952
Number of extensions: 308581
Number of successful extensions: 812
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)