Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20064
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     34   0.027
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    29   0.77 
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    29   1.0  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    26   5.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    22   8.5  

>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 625 DQLIMHQKVELLEAFVGVETNNKYTVMNSVGQ 720
           D LI+ +++E++  F+G E  N+Y ++N  GQ
Sbjct: 77  DVLIVERQLEMMNVFLGYEQANRYVILNQQGQ 108


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = -3

Query: 539 QGALTHLAKTTHCKLEHLPYPKTLVITQ*NTN*KLSYSISTLHNTVFVNATTKPLFFFSQ 360
           +G    + +  + K+ H  Y +++     +++  L + +  L +TV+V++ T P+F    
Sbjct: 464 KGFARKVKRIKYSKISHPTYTESVSFLWLDSSLWLDWIVENLDHTVYVDSITPPVFVIDH 523

Query: 359 *SFITTVI-RLENSLVKSAITSFNTL 285
              +  V  R  NSL     + F+TL
Sbjct: 524 SKGVIYVSDRNGNSLTLEEDSLFSTL 549


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 103 KRTIMISDSSNNSFDPQSNEEVKKPAESSALWPKLKYYL 219
           K T+ +S SS+N      N EV     +S   PKLK+Y+
Sbjct: 513 KATLPVSKSSDNVTFELENGEVIMTIRTSGTEPKLKFYI 551


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 607 EYLSMIDQLIMHQKVELLEAFVGVETNNKYTVMNSVGQ 720
           +YLSM+     +   E L  F+ VET   + + NS+ Q
Sbjct: 617 KYLSMLSAHSSYWSSEDLACFLVVETGRNFGIANSIEQ 654


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 22.2 bits (45), Expect(2) = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 94  LNFKRTIMISDSSNNSFDPQSNEE 165
           LN K+++ I      SFD + N+E
Sbjct: 107 LNKKKSLEIKYDEERSFDEKENDE 130



 Score = 21.4 bits (43), Expect(2) = 8.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 151 QSNEEVKKPAESSALWPKLKYY 216
           +++EE+KK    + LW K+  Y
Sbjct: 167 ETDEEIKKNPGKARLWIKMCEY 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,536
Number of Sequences: 5004
Number of extensions: 61654
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)