Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20064
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0614 - 5069976-5070479                                           28   9.8  
01_06_0106 - 26516930-26517349,26517474-26517905,26517981-265180...    28   9.8  

>12_01_0614 - 5069976-5070479
          Length = 167

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 698 VYLLFVSTPTKASNNSTF*CIISWSIMERYSKPRGQL 588
           V L+  +TP  AS N T     ++ ++ERY  PRG L
Sbjct: 18  VVLVVAATPAAASGNGTS-TPTAYEMLERYDFPRGIL 53


>01_06_0106 -
           26516930-26517349,26517474-26517905,26517981-26518058,
           26518352-26518499,26518662-26518765,26518838-26518912,
           26519195-26519261,26519352-26519356
          Length = 442

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 276 LSMKSIKRSYCRLYKRVFKSNHCGYE-RLLTEEEKRFSCSIDKYSIV 413
           +  K ++  YC + K V K   CG   R   +    F+C  D+Y +V
Sbjct: 263 IGKKEVEDKYCLIAKDVVKLKKCGNGWRGAEDGRSNFACLEDEYCLV 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,867,424
Number of Sequences: 37544
Number of extensions: 324968
Number of successful extensions: 674
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)