Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20064
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)                 33   0.35 
SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)                  32   0.47 
SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8)                 31   1.1  
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)             29   4.3  
SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14)                 28   7.6  
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)
          Length = 467

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +1

Query: 85  KYLLNFKRTIMISDSSNNSFDPQSNEEVKKPAESSALWPKLKYYLNIKRVAIKSYRERVF 264
           KY + FK  + +  S N    P   +  K    S +L    + YL +KR  +K+Y +R F
Sbjct: 369 KYRIIFKVLLTVFKSLNEMAPPYIKDLCKYKTHSRSLRSASQQYLQVKRGNLKTYGDRAF 428


>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
          Length = 554

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 664 AFVGVETNNKYTVMNSVGQK 723
           AF G ETNNKY + N++GQ+
Sbjct: 297 AFTGFETNNKYKITNNLGQQ 316



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 758 KNCCGPLRPFDMK 796
           + CCGP RPFD+K
Sbjct: 329 RQCCGPSRPFDIK 341


>SB_22824| Best HMM Match : Herpes_gI (HMM E-Value=1.8)
          Length = 1255

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 691 KYTVMNSVGQKFIMRLRIMIAAQELLRT 774
           KYTV+N+VG+  + RL+I  A + L  T
Sbjct: 780 KYTVLNNVGRNLVSRLKITFAGETLQDT 807


>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
          Length = 1851

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +1

Query: 85   KYLLNFKRTIMISDSSNNSFDPQSNEEVKKPAESSALWPKLKYYLNIKRVAIKSYRERVF 264
            KY   FK  + +  S N        +  K    S +L    + YL +KR  +K+Y +R F
Sbjct: 950  KYRKIFKALLAVFKSLNEMAPLYIKDLCKYKTHSRSLRSASQQYLQVKRGNLKTYGDRAF 1009

Query: 265  -ILRP*V*RVLNEVIADFTR 321
             I  P V R L    A   R
Sbjct: 1010 SIAAPKVSRSLCSACASHHR 1029


>SB_27563| Best HMM Match : SAM_2 (HMM E-Value=7.3e-14)
          Length = 226

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 577 ASLSNCPRGLEYLSMIDQLIMHQKVE 654
           A +SNC RG++ LS +++ ++ QK E
Sbjct: 194 ADVSNCERGVKELSCLEKALLAQKSE 219


>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 219 EHQACGY*KL*RKSVY-IETLSMKSIKRSYCRLYKRVFKSNHCGYERLLTEEEKRFSCSI 395
           +H+ CG  K  RK ++   + +   +K   CRL  + F           T +EK F CS 
Sbjct: 460 QHERCGK-KFARKDLFEYHSRTHSGLKPYRCRLCDKYFAQRSLVRSHERTHQEKPFKCSD 518

Query: 396 DKYS 407
            K S
Sbjct: 519 CKMS 522


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,778,121
Number of Sequences: 59808
Number of extensions: 424029
Number of successful extensions: 950
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)