Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20064
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.9  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   5.7  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   10.0 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   10.0 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   10.0 

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 125 SLIIIVLLKFSRYFQIKKLHIIEV 54
           SL+I  L+ +  YF+I + H++E+
Sbjct: 17  SLLIPALILYFIYFRISRRHLLEL 40


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 KRSYCRLYKRVFKSNHCGYERLLTEEEK 377
           +RS  R   R ++     YE+L  EEEK
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLCNEEEK 28


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 KRSYCRLYKRVFKSNHCGYERLLTEEEK 377
           +RS  R   R ++     YE+L  EEEK
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLCNEEEK 28


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 KRSYCRLYKRVFKSNHCGYERLLTEEEK 377
           +RS  R   R ++     YE+L  EEEK
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLCNEEEK 28


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 294 KRSYCRLYKRVFKSNHCGYERLLTEEEK 377
           +RS  R   R ++     YE+L  EEEK
Sbjct: 1   ERSCSRDRNREYRKKDRQYEKLCNEEEK 28


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 721 FDQHCS*LCICC 686
           ++ HC  LC CC
Sbjct: 739 YEAHCFALCHCC 750


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 611  YSKPRGQL--LRLAAYSSNHHLS*ITQGALTHLAKTTHCKLEHLPYPKTLVI 462
            Y    G L  L+L+ ++++H L  +  G    L  T+H K+   P    L +
Sbjct: 1441 YRTAHGNLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSSPVLSV 1492


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -3

Query: 611  YSKPRGQL--LRLAAYSSNHHLS*ITQGALTHLAKTTHCKLEHLPYPKTLVI 462
            Y    G L  L+L+ ++++H L  +  G    L  T+H K+   P    L +
Sbjct: 1437 YRTAHGNLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSSPVLSV 1488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,362
Number of Sequences: 438
Number of extensions: 4326
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)