Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20064
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR...    30   1.5  
At1g26798.1 68414.m03264 Expressed protein                             30   2.0  
At4g04745.1 68417.m00696 expressed protein                             29   2.7  
At5g15330.1 68418.m01795 SPX (SYG1/Pho81/XPR1) domain-containing...    29   3.6  

>At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 900

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/72 (23%), Positives = 34/72 (47%)
 Frame = +1

Query: 535 PCVI*LKWWLDEYAASLSNCPRGLEYLSMIDQLIMHQKVELLEAFVGVETNNKYTVMNSV 714
           PC+     WLD     +   P  ++ LS +++L+M+  ++L     G+ T      ++ +
Sbjct: 761 PCLPKTIEWLDLSRTEIEEVPLWIDKLSKLNKLLMNSCMKLRSISSGISTLEHIKTLDFL 820

Query: 715 GQKFIMRLRIMI 750
           G K I+   + I
Sbjct: 821 GCKNIVSFPVEI 832


>At1g26798.1 68414.m03264 Expressed protein
          Length = 151

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -2

Query: 612 VFQTSRAVAEACGIFIQPPFKLDHTRSINTFSKNNTL*VRTFTVSKNIGYNTIKHQLKIK 433
           +F+TS A      + +  PF   H   INT + +  L V      K++G + ++ Q +I 
Sbjct: 19  IFKTSLAFENYTSVDVDLPFAPKHVIIINTLNPHERLVVHCRNKGKDLGVHALEPQEQID 78

Query: 432 LLYK 421
             ++
Sbjct: 79  FRFR 82


>At4g04745.1 68417.m00696 expressed protein
          Length = 121

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +1

Query: 31  RRNKKVEKTSI-ICNFFI*KYLLNFKRTIMISDSSNNS 141
           ++ +K+ KT+  ICN  I ++L +FKR +  S SS++S
Sbjct: 70  KKLRKLRKTNTCICNNLITRFLKSFKRFLCSSSSSSSS 107


>At5g15330.1 68418.m01795 SPX (SYG1/Pho81/XPR1) domain-containing
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profile PF03105: SPX domain
          Length = 318

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/80 (28%), Positives = 38/80 (47%)
 Frame = -3

Query: 623 IMERYSKPRGQLLRLAAYSSNHHLS*ITQGALTHLAKTTHCKLEHLPYPKTLVITQ*NTN 444
           I+++Y K  G LLRL       H    T   LT L +     LE L +P    + + +++
Sbjct: 169 ILKKYDKRTGGLLRLPFTQLVLHQPFFTTEPLTRLVRECEANLE-LLFPSEAEVVE-SSS 226

Query: 443 *KLSYSISTLHNTVFVNATT 384
              ++S S  HN+  ++A T
Sbjct: 227 AVQAHSSSHQHNSPRISAET 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,020
Number of Sequences: 28952
Number of extensions: 293893
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)