Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20061
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 30 0.42
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 29 0.74
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 27 2.2
SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyce... 27 2.2
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 27 3.0
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 27 3.9
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 26 5.2
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 26 5.2
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 26 6.9
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 6.9
SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces... 25 9.1
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 9.1
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 9.1
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 25 9.1
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 29.9 bits (64), Expect = 0.42
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 655 VLPNVNSTI-YHDVPAIINLVDYV----NVGAYDYYTPTRNTKK 771
++ + ST+ YHD+ IN+V V +G Y+YY T+ KK
Sbjct: 316 IITIIASTLFYHDILLPINIVGLVITLCGIGVYNYYRITKGNKK 359
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 29.1 bits (62), Expect = 0.74
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 296 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 424
AK G ++ VGG ++ E EK + ++++ A A ++ GVL
Sbjct: 402 AKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVL 444
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 399 LLSLIPECCWLNNMVSMELTSP 464
L +L+PE W NNM EL +P
Sbjct: 227 LQALLPEVAWKNNMNQWELLNP 248
>SPAC25B8.12c |||nucleotide-sugar phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 251 HNRTH-DNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 424
H+R H YRA+ ++ KYP ++L+ G + + L L++ A A +N VL
Sbjct: 31 HHRFHFRTYRAMKYIREKYPNFPIVLATGKQRSAVDLIRIPLDLDAFPA--AHVNGCVL 87
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 196 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCC 80
S+ GC +TE+ T+ C E SCC S K CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -2
Query: 462 ARSIPSKPYC--SANSTPELMKAVRACCDSSRRLYFSGSSVSASPPTDNNTVRPG 304
A S PS P S +STP + ++ + + Y +SVS+ PP ++ V PG
Sbjct: 277 ATSAPSVPSALSSISSTPFMKPSIPSTIPTIPSAY--SASVSSQPPLTHSYVHPG 329
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 642 LHLRLVDKGLFQFTNKGSETFTVLRFLLIDWRGAECLLNSMP 517
+H+ + LFQ T K + + L F L + G EC+L P
Sbjct: 271 IHVSTLVTPLFQVTEKIGKNTSDLWFALCEIDGLECVLKYRP 312
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 479 VKPKKIRSTWDRFGMELRRHSAPRQS-MRRNLSTVKV 586
+ P + R +WD + ME+ +A R + M+R + V V
Sbjct: 191 LNPNRFRPSWDSYFMEMASLAAKRSNCMKRRVGCVLV 227
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 248 GHNRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSG 418
G ++ D+ + TS + + +GG TEE + YN+ +E +A T +IN G
Sbjct: 318 GKDKFVDSLNSWTSELTHCKNIILTPHIGGS--TEEAQ-YNIGIEVSEALTRYINEG 371
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -2
Query: 435 CSANSTPELMKAVRACCDSSRRLYFSGS 352
C NST + M V C D RLY G+
Sbjct: 652 CEFNSTRKRMSIVFRCPDGKIRLYVKGA 679
>SPAC25B8.14 |mal2||kinetochore protein Mal2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 378 WNRSKPVLLSLIPECCWLNNMVSMELTSPGSSQEL 482
W R + LSL+ W+N +VS LT+P S L
Sbjct: 270 WKRDHRLELSLLDNKRWVNILVS-HLTAPESHASL 303
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 90 TLLLRQQELCQRISSPHAAVGPRSRSVVLHPLAV 191
TLL++Q+ LC S A+ S S V+ PL +
Sbjct: 1045 TLLIKQENLCNNGSLLFEAIEQNSLSKVMIPLNI 1078
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 317 VLLSVGGDADTEEPEKYNLLLESQQARTAFINS 415
++ VGG+AD + E +LL + +A +N+
Sbjct: 348 IVPQVGGEADVDPKEYMEMLLSTYKASKELVNT 380
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +1
Query: 589 TALVRELKQAL----IHKPKMQL--GVTVLPNVNSTIYHDVPAIINLVDYV 723
T ++ ELK + I +PK +L G+ V N TIY + A+IN + +
Sbjct: 215 TQVLEELKTGISDLSISRPKQRLSWGIPVPGNSQQTIYVWLDALINYISVI 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,523
Number of Sequences: 5004
Number of extensions: 63077
Number of successful extensions: 189
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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