Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20061
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       51   1e-06
04_03_0649 - 18402976-18403220,18403305-18404499                       40   0.002
10_08_0009 + 14075929-14076789                                         33   0.25 
06_03_0010 + 15355685-15355903                                         31   0.77 
03_02_0502 - 8934646-8934834,8934974-8935121,8935228-8935304,893...    30   2.4  
01_05_0494 + 22701994-22703117,22703526-22703580                       29   4.1  
06_03_1310 + 29238644-29240260                                         29   5.4  
08_02_0843 - 21759183-21759556,21760255-21762913                       28   7.2  
02_01_0302 - 2021221-2023305                                           28   7.2  
01_07_0025 + 40565296-40565497,40565591-40566075                       28   9.5  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
 Frame = +2

Query: 284 TSLKAKYPGLTV--LLSVGGDADTEEPEK--YNLLLESQQARTAFINSGVLLAEQYGFDG 451
           +S+K+   G  V  +LS+G D   E+     ++ +   +  R AFINS + LA   GFDG
Sbjct: 98  SSIKSSGGGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDG 157

Query: 452 IDLAWQFP 475
           +DLAW+FP
Sbjct: 158 LDLAWRFP 165


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = +2

Query: 392 ARTAFINSGVLLAEQYGFDGIDLAWQFP 475
           +R AFI + V +A + GFDG+D+AW+FP
Sbjct: 143 SRAAFIGAAVKVARENGFDGLDVAWRFP 170


>10_08_0009 + 14075929-14076789
          Length = 286

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +2

Query: 278 AITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL----LAEQYGF 445
           A+ + KA +P L+V+L++GGD  T +    N       +  A++ +       L + YG 
Sbjct: 70  AVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGL 127

Query: 446 DGIDLAWQ 469
           DG+D+ ++
Sbjct: 128 DGVDVDYE 135


>06_03_0010 + 15355685-15355903
          Length = 72

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 555 DWRGAECLLNSMPKRSQVERIFLGLTLGNCQARSIPSKP 439
           DWR    L+  MP R ++ERI+    +    + SIPSKP
Sbjct: 12  DWRHHSSLVRLMPMREELERIYSPPIVVWNYSPSIPSKP 50


>03_02_0502 -
           8934646-8934834,8934974-8935121,8935228-8935304,
           8935427-8935497,8935594-8935680,8935852-8936316,
           8936406-8936880
          Length = 503

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -3

Query: 734 APTFT*STKLMMAGTSW*IVELTLGKTVTPSCILGLWIRACFNSRTR 594
           AP    S+ L      W IV   +   V   C+L LWIR C   R R
Sbjct: 91  APQKDSSSGLSSTAVVWIIVAAGVVGAVLALCVLTLWIRRCRRQRRR 137


>01_05_0494 + 22701994-22703117,22703526-22703580
          Length = 392

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -2

Query: 354 SSVSASPPTDNNTVRPGYLAFKLVIAR*LSCVRLCPGSRLRTP 226
           +++SASPPT +++ RP  LA  ++++R L       GS+   P
Sbjct: 147 ATLSASPPTPSSSPRPYMLAAVVLVSRRLDVAFWVQGSKCWFP 189


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 171 VLHPLAVRLCGIQPDTYKLVSLNENLDITEH 263
           +LH  + R CG+ PDT+  + L   LDI+ +
Sbjct: 118 LLHLNSNRFCGVLPDTFSHLRLLHELDISNN 148


>08_02_0843 - 21759183-21759556,21760255-21762913
          Length = 1010

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 126 ISSPH-AAVGPRSRSVVLHPLAVRLCGIQPDTYKLVSLNENLDITEHTTT 272
           IS P  +++G  ++  VLH L  RL GI PDT   +      D++ ++ T
Sbjct: 101 ISGPMPSSIGNCTKLEVLHLLRNRLSGILPDTLSNIEALRVFDLSRNSFT 150


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 171 VLHPLAVRLCGIQPDTYKLVSLNENLDITEH 263
           ++H  + R CG+ PDT++ + L   LD++ +
Sbjct: 136 LIHLNSNRFCGVVPDTFRRLRLLHELDLSNN 166


>01_07_0025 + 40565296-40565497,40565591-40566075
          Length = 228

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 538 MSS*FHAKAIPGRADLLRLNSWELPGE 458
           MS    A  IP  ADL RL+ W+LPGE
Sbjct: 44  MSRPLPADVIPV-ADLARLHPWDLPGE 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,084,207
Number of Sequences: 37544
Number of extensions: 447493
Number of successful extensions: 1214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)