Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20061
(772 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 57 1e-08
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 57 2e-08
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 52 5e-07
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32) 39 0.004
SB_39649| Best HMM Match : DUF81 (HMM E-Value=3.3) 30 1.8
SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3) 29 3.1
SB_27940| Best HMM Match : IncA (HMM E-Value=0.41) 29 5.5
SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6) 29 5.5
SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40) 28 7.3
SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 57.6 bits (133), Expect = 1e-08
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +2
Query: 272 YRAITSLKAKYPGLTVLLSVGGDADTEEP-EKYNLLLESQQARTAFINSGVLLAEQYGFD 448
Y+ I LK K P L LL+VGG P ++ ++ S+ RT FI+S + L+++Y FD
Sbjct: 455 YKEINDLKLKNPSLKTLLAVGGWNHESGPVSPFSQMVASKSNRTTFISSLLQLSDKYDFD 514
Query: 449 GIDLAWQFP 475
G DL W++P
Sbjct: 515 GFDLDWEYP 523
Score = 36.3 bits (80), Expect = 0.027
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 91 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYA 201
+CY+ + + R + LP D+DP L CTH++Y +A
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLL--CTHIVYAFA 435
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/90 (30%), Positives = 49/90 (54%)
Frame = +2
Query: 263 HDNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYG 442
H+ Y+ I +LK P L ++VGG E+ ++ ++ +++ R FI S + +G
Sbjct: 75 HELYQRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTHG 134
Query: 443 FDGIDLAWQFPRVKPKKIRSTWDRFGMELR 532
FDG+DL W++P ++ +S RF + R
Sbjct: 135 FDGLDLDWEYPGMRGGSPKSDKGRFTLLCR 164
Score = 54.0 bits (124), Expect = 1e-07
Identities = 26/84 (30%), Positives = 45/84 (53%)
Frame = +2
Query: 266 DNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGF 445
D Y+ I +LK P L ++VGG E+ ++ ++ +++ R FI S + GF
Sbjct: 461 DLYKRINALKKINPKLKTQIAVGGWTHEEKNSPFSKMVATKEKRAIFIKSAIETLRTNGF 520
Query: 446 DGIDLAWQFPRVKPKKIRSTWDRF 517
DG+DL W++P ++ +S RF
Sbjct: 521 DGLDLDWEYPGMRGGSPKSDKGRF 544
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 94 CYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYA 201
CYY + S R P D+DP L CTH+L+ +A
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFL--CTHILFSFA 58
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 91 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYAVSSLT 216
+CYY + S R P D+DP L CTH+++ ++ +LT
Sbjct: 409 VCYYTNWSQYRPKGGTFWPEDIDPHL--CTHVIHSFSKVNLT 448
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/68 (35%), Positives = 38/68 (55%)
Frame = +2
Query: 272 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDG 451
Y+ LK K PGL LL+VGG ++ ++ + +R FI+S + + Q+ FDG
Sbjct: 187 YKEFNDLKLKNPGLKTLLAVGGWNHENYKSPFSRMVRTAASRKVFIDSSIAMLRQWNFDG 246
Query: 452 IDLAWQFP 475
DL W++P
Sbjct: 247 FDLDWEYP 254
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/71 (32%), Positives = 39/71 (54%)
Frame = +2
Query: 272 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDG 451
Y +LK K P L LL+VGG ++ ++++ R FI+S + + +GFDG
Sbjct: 75 YPRFNALKQKNPELKTLLAVGGWNHENANSPFSRMVKTAATRKVFIDSVIRILRTWGFDG 134
Query: 452 IDLAWQFPRVK 484
+DL W++P +
Sbjct: 135 LDLDWEYPATR 145
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 91 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYA 201
+CY+ + S R+ +A+ P D+ PA CTHL+Y +A
Sbjct: 22 VCYHTNWSQYRQGRAKFWPEDI-PA-DLCTHLMYSFA 56
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +2
Query: 272 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDG 451
Y+ + LK+ + LL+VGG P + ++ + R FI+ +L + FDG
Sbjct: 78 YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 134
Query: 452 IDLAWQFP 475
+DL W++P
Sbjct: 135 LDLDWEYP 142
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 91 LCYYDSRSYVRESQARMLPLDLDPALSFCTHLLYGYA 201
+CYY + + R A+ P ++DP+L CTH++Y +A
Sbjct: 25 VCYYTNWAQYR-GLAKYTPDNIDPSL--CTHIVYAFA 58
>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
Length = 561
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +2
Query: 272 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDG 451
Y+ + LK+ + LL+VGG P + ++ + R FI+ +L + FDG
Sbjct: 2 YKKVNDLKSS-SNMKTLLAVGGWNMGSGP--FQDMVSTASRRKIFIDDAILFLRNHMFDG 58
Query: 452 IDLAWQFP 475
+DL W++P
Sbjct: 59 LDLDWEYP 66
>SB_39649| Best HMM Match : DUF81 (HMM E-Value=3.3)
Length = 681
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 230 VLKREPGHNRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFI 409
+L G N +HD +R SL GL + + T+EP+K + L A++
Sbjct: 52 LLGESSGENLSHDQWREFMSLGLIISGLGIFFAGMFHIGTKEPKKDHGKLSIISAKSYAA 111
Query: 410 NSG 418
NSG
Sbjct: 112 NSG 114
>SB_54874| Best HMM Match : Toxin_28 (HMM E-Value=1.3)
Length = 506
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 450 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 322
P P C A S+ E + ++R D RR+ F G V PP N
Sbjct: 384 PDIPICVAASSSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 428
>SB_27940| Best HMM Match : IncA (HMM E-Value=0.41)
Length = 418
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 450 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 322
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_15804| Best HMM Match : Toxin_28 (HMM E-Value=8.6)
Length = 329
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 450 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 322
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWIRDDRGRRVDFKGKPVRLCPPPAN 227
>SB_11550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 450 PSKPYCSANSTPELMKAVRACC--DSSRRLYFSGSSVSASPPTDN 322
P P C A S E + ++R D RR+ F G V PP N
Sbjct: 183 PDIPICVAASPSEFVSSIRIWISDDRGRRVDFKGKPVRLCPPPAN 227
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = -2
Query: 624 DKGLFQFTNKGSET--------FTVLRFLLIDWRGAECLLNSMPKRSQVERIFLGLTLGN 469
++ LFQ T++G+ T ++ LL+ W C L +S ER+ LT+
Sbjct: 2867 NQALFQGTHEGNNTEILVEKNNMKLIIRLLLQWNDHLCCLQFKRNKSLQERVIFELTILI 2926
Query: 468 CQARSIPSKPYCSANSTP 415
+++P AN++P
Sbjct: 2927 SPFQALPRGGAVDANASP 2944
>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
Length = 1042
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 266 DNYRAITSLKAKYPGLT---VLLSVGGDADTEEPEKYNL 373
DNY + + YP T V+LS GDA T +KY L
Sbjct: 112 DNYASCKLIPLTYPYYTPPVVILSANGDASTLPSDKYAL 150
>SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 553
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 598 VRELKQALIHKPKMQLGVTVLPNVNSTIYHDVPAIINLVDYVN 726
+R++K+A H K G V N I D + NL+D++N
Sbjct: 233 LRQIKRARAHANKSDQGSEVPKIENHRIRLDTNKVDNLIDFIN 275
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,353,949
Number of Sequences: 59808
Number of extensions: 516339
Number of successful extensions: 1336
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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