Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20061
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   4.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 641  CILGLWIRACFNSRTRAVKPSRCSDSFSSTGVVPNVFL 528
            C  G   R  +  R   V  + CSD FS  GV+ ++ +
Sbjct: 955  CYYGGDARPAYRRRLN-VNETVCSDYFSQGGVIESIMV 991


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 544 TTPVDEKESEHREGFTALV 600
           T P+D+  S+  EGF A++
Sbjct: 150 TNPLDDSISQANEGFCAVI 168


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 544 TTPVDEKESEHREGFTALV 600
           T P+D+  S+  EGF A++
Sbjct: 145 TNPLDDSISQANEGFCAVI 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,039
Number of Sequences: 438
Number of extensions: 4978
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)