Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20061
(772 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 48 5e-06
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 47 1e-05
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 47 2e-05
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 46 2e-05
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 44 1e-04
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 42 5e-04
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 41 8e-04
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 41 0.001
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 38 0.006
At5g40470.1 68418.m04908 expressed protein 33 0.28
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 31 0.64
At4g15960.1 68417.m02423 epoxide hydrolase, putative similar to ... 30 1.5
At2g19640.2 68415.m02295 SET domain-containing protein contains ... 29 2.6
At2g19640.1 68415.m02294 SET domain-containing protein contains ... 29 2.6
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 29 3.4
At5g05680.1 68418.m00625 nuclear pore complex protein-related co... 28 7.9
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 28 7.9
At1g76660.1 68414.m08920 expressed protein 28 7.9
At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein con... 28 7.9
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +2
Query: 272 YRAIT-SLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFD 448
+ A T +++ + P + LLS+GG + + + + + +R +FI S + +A YGF
Sbjct: 55 FHAFTETVQQRNPHVKTLLSIGGG--NADKDAFASMASNPDSRASFIQSTITVARSYGFH 112
Query: 449 GIDLAWQFPR 478
G+DL W++PR
Sbjct: 113 GLDLDWEYPR 122
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 685 HDVPAIINLVDYVNVGAYDYYTPTRNT 765
+ V AI N +D++N+ AYD+Y P +T
Sbjct: 170 YPVLAISNSLDWINLMAYDFYGPGWST 196
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +2
Query: 287 SLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAW 466
++K + P + LLS+GG + + + Q+R FI+S + +A GF G+DLAW
Sbjct: 73 TVKIRNPQVKTLLSIGGK--NANNSAFASMASNHQSRKTFIDSWIFIARSNGFHGLDLAW 130
Query: 467 QFP 475
++P
Sbjct: 131 EYP 133
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 628 KPKMQLGVTVL-PNVNSTIYHDVPAIINLVDYVNVGAYDYYTPTRNTK 768
KP + L V +V T + V + +D+VN+ AYD+Y P ++K
Sbjct: 162 KPTLLLTAAVYYSSVYKTFTYPVQVMRESLDWVNIIAYDFYGPVSSSK 209
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/63 (31%), Positives = 37/63 (58%)
Frame = +2
Query: 287 SLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAW 466
+++ + P + LLS+GG + Y + + +R +FI+S + +A YGF G+DL W
Sbjct: 82 TVQRRNPSVKTLLSIGGGI--ADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDW 139
Query: 467 QFP 475
++P
Sbjct: 140 EYP 142
Score = 34.3 bits (75), Expect = 0.090
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +1
Query: 586 FTALVRELKQALIH------KPKMQLGVTVLPNVNS-TIYHDVPAIINLVDYVNVGAYDY 744
F L+RE + A++ KP++ L V + N ++ + V A+ + +D+VN+ AYD+
Sbjct: 151 FGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDF 210
Query: 745 YTP 753
Y P
Sbjct: 211 YGP 213
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +2
Query: 251 HNRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLA 430
H + N+ I +K K P + LLS+GG + + + + +R +FI S + A
Sbjct: 61 HEQEFSNFTKI--VKKKNPHVQTLLSIGGR--NADKSAFASMASNPTSRKSFIWSAISSA 116
Query: 431 EQYGFDGIDLAWQFPR 478
Y FDG+DL W++P+
Sbjct: 117 RYYRFDGLDLVWKYPK 132
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/82 (31%), Positives = 42/82 (51%)
Frame = +2
Query: 287 SLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAW 466
+++ + P + LLS+GGD + + + +R FI+S + LA GF G+DL W
Sbjct: 80 TVRRRNPTVKTLLSIGGDFTYNFA--FASMASNPTSRKLFISSSIKLARSCGFHGLDLNW 137
Query: 467 QFPRVKPKKIRSTWDRFGMELR 532
++P I + D FG LR
Sbjct: 138 KYP-----SITTEMDNFGKLLR 154
Score = 31.9 bits (69), Expect = 0.48
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +1
Query: 544 TTPVDEKESEHREGFTALVRELKQALIHKPKMQLGVTVLPNVNS-TIYHDVPAIINLVDY 720
TT +D RE A+ E + + KP++ L V + + ++ H V A+ + +D+
Sbjct: 143 TTEMDNFGKLLREWRLAVEAEARSS--GKPRLLLTAAVFYSYSYYSVLHPVNAVADSLDW 200
Query: 721 VNVGAYDYY 747
VN+ AYD+Y
Sbjct: 201 VNLVAYDFY 209
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 374 LLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPR 478
+ S R +FI S + +A YGFDG+DL W++PR
Sbjct: 1 MASSSYGRKSFILSTISIARSYGFDGLDLDWEYPR 35
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 664 NVNSTIYHDVPAIINLVDYVNVGAYDYYTP 753
N N +Y V I L+D+VN+ AYD+Y P
Sbjct: 77 NYNGVVY-PVKFISELLDWVNIKAYDFYGP 105
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 41.1 bits (92), Expect = 8e-04
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +2
Query: 287 SLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAW 466
++K K + LLS+GG D ++ ++ S+ R AFI+S + +A + F G+DLAW
Sbjct: 78 TVKEKNTDVQTLLSIGGK-DADKAVLASMASNSKN-RKAFIDSSIDIARKKDFYGLDLAW 135
Query: 467 QFP 475
++P
Sbjct: 136 EYP 138
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 679 IYHDVPAIINLVDYVNVGAYDYYTP 753
+ + V AI + +D+VN+ AYD+Y P
Sbjct: 185 VEYPVKAIADNLDFVNIMAYDFYGP 209
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/63 (34%), Positives = 38/63 (60%)
Frame = +2
Query: 287 SLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAW 466
++K K + LLS+GG D ++ ++ S+ R AFI+S + +A + F G+DLAW
Sbjct: 70 TVKDKNTDVQTLLSIGGK-DADKAVLASMASNSKN-RKAFIDSSIDIARKKDFYGLDLAW 127
Query: 467 QFP 475
++P
Sbjct: 128 EYP 130
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 685 HDVPAIINLVDYVNVGAYDYYTP 753
+ V AI + +D+VN+ AYD+Y P
Sbjct: 179 YPVQAIADNLDFVNIMAYDFYGP 201
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = +2
Query: 374 LLESQQARTAFINSGVLLAEQYGFDGIDLAWQFP 475
++ ++ +R +FI+S + +A GF G+DLAW++P
Sbjct: 79 IVSNRTSRESFISSSISIARSLGFYGLDLAWEYP 112
>At5g40470.1 68418.m04908 expressed protein
Length = 496
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/66 (30%), Positives = 34/66 (51%)
Frame = -2
Query: 534 LLNSMPKRSQVERIFLGLTLGNCQARSIPSKPYCSANSTPELMKAVRACCDSSRRLYFSG 355
+LN+ P S + I+ G+T+G +RS + EL+ + +CC + R L F
Sbjct: 73 ILNNHPCLSSLS-IYRGVTIGTTPSRSDEEHLKAETIFSDELISIISSCCFNLRNLCFLI 131
Query: 354 SSVSAS 337
+ VS+S
Sbjct: 132 NPVSSS 137
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/78 (23%), Positives = 39/78 (50%)
Frame = +2
Query: 296 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFP 475
AK G ++ VGG +TE ++ + +++ A A + G++ G I L + P
Sbjct: 401 AKLTGGVAVIKVGGHTETELEDRKLRIEDAKNATFAAMREGIVPGG--GATYIHLLDEIP 458
Query: 476 RVKPKKIRSTWDRFGMEL 529
R+K + ++++ G ++
Sbjct: 459 RIKKNLMEDSYEQIGADI 476
>At4g15960.1 68417.m02423 epoxide hydrolase, putative similar to
epoxide hydrolase [Solanum tuberosum] GI:407944;
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family
Length = 375
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Frame = +2
Query: 314 TVLLSVGGDADTEEPEK---YNLLLESQQ--ARTAFINSGVLLAEQYGFD-GIDLAWQFP 475
T+ + G DTE PEK Y LL + A + G G D G +AWQ
Sbjct: 109 TIAPDLRGYGDTEAPEKVEDYTLLKRGRSVVALIVAVTGGDKAVSVVGHDWGAMIAWQLC 168
Query: 476 RVKPKKIRS 502
+ +P+K+++
Sbjct: 169 QYRPEKVKA 177
>At2g19640.2 68415.m02295 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 398
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 468 CQARSIPS--KPYCSANSTPELMKAVRACCDSSRRLYFSGSSVSASPPTD 325
CQ+ S+ S P C A+ TP L C+S RRL+ S SS + P+D
Sbjct: 75 CQSCSLVSFCSPNCFASHTPWL-------CESLRRLHQSSSSAFSDQPSD 117
>At2g19640.1 68415.m02294 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 341
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 468 CQARSIPS--KPYCSANSTPELMKAVRACCDSSRRLYFSGSSVSASPPTD 325
CQ+ S+ S P C A+ TP L C+S RRL+ S SS + P+D
Sbjct: 75 CQSCSLVSFCSPNCFASHTPWL-------CESLRRLHQSSSSAFSDQPSD 117
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 296 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 424
AK G +L +GG ++TE EK + + ++ A A + G++
Sbjct: 401 AKLSGGVAVLKIGGASETEVSEKKDRVTDALNATKAAVEEGIV 443
>At5g05680.1 68418.m00625 nuclear pore complex protein-related
contains weak similarity to Nuclear pore complex protein
Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
protein) (Swiss-Prot:Q99567) [Homo sapiens]
Length = 810
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +1
Query: 532 KTFGTTPVDEKESEHREGFTALVRELKQALIHKPKMQLGVTVLPNVNSTIYHDVPAIINL 711
KT ++ +++KE E+ + ++ + L+ PK+++ LPN ST + V L
Sbjct: 568 KTVSSSAIEKKEQEN----SCII---SKELLAGPKIRIAPHALPNQRSTPANSVEGRSIL 620
Query: 712 VDYVNVGAYDY 744
+DYV + +Y
Sbjct: 621 LDYVKLFHENY 631
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 296 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 424
AK G +L +GG ++ E EK + + ++ A A + G+L
Sbjct: 400 AKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIL 442
>At1g76660.1 68414.m08920 expressed protein
Length = 431
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -2
Query: 267 SCVRLCPGSRLRTPAYRCQAGYRIAVQQVGAERQSGIEVQRQHAGLRFSDIAP 109
SC + G + PA R G ++ Q Q+G+ + G+ S +AP
Sbjct: 19 SCFKSQKGGKRIVPASRIPEGGNVSASQPNGAHQAGVLNNQAAGGINLSLLAP 71
>At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:3820531) [Pinus
contorta]; similar to beta-glucosidase GI:804655 from
(Hordeum vulgare)
Length = 520
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 272 YRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGF-D 448
++ + LK +YP + + ++ G D ++PE + L + R ++ SG L A Q D
Sbjct: 398 HKMLNYLKDRYPNMPMFITENGFGDLQKPETTDKELLNDTKRIQYM-SGYLEALQAAMRD 456
Query: 449 GIDLAWQF 472
G ++ F
Sbjct: 457 GANVKGYF 464
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,555,973
Number of Sequences: 28952
Number of extensions: 343489
Number of successful extensions: 976
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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