Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20060X
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    27   4.9  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    27   4.9  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    26   8.6  

>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 246 HIESAXEFLSLLDE-DF--TDPEAISNFKEL 329
           H+ESA   L LLD+ DF  T P +   FK+L
Sbjct: 209 HVESARAGLDLLDQSDFSLTSPSSAKEFKQL 239


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 288 DFTDPEAISNFKELKSKGFLPK 353
           +FT+ EAI   K+L +K  LPK
Sbjct: 275 NFTEEEAIEECKKLNTKSMLPK 296


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 107 LXMKKAQTRXPNLVPNSCSPGDPLVLERPPP 15
           L + +  T   NL  +  + GD  V+ERPPP
Sbjct: 744 LLVNRTDTTLQNLSVDLATLGDLKVVERPPP 774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,370,912
Number of Sequences: 5004
Number of extensions: 33688
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)