Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20060X
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0167 - 15923872-15925683                                         28   9.0  
01_06_1239 + 35652053-35654050                                         28   9.0  

>02_03_0167 - 15923872-15925683
          Length = 603

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 303 EAISNFKELKSKGFLPKGDHFHRV 374
           EA+  FKE+K+KGF P G  F  V
Sbjct: 440 EALVLFKEMKNKGFQPDGIAFTHV 463


>01_06_1239 + 35652053-35654050
          Length = 665

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 237 RSGHIESAXEFLSLLDEDFTDPEAI--SNFKELKSKG 341
           R+GH++ A  FL L+++D   P+ +  SN   L  +G
Sbjct: 175 RAGHLDHALTFLPLMEDDAVAPDLVLFSNLIHLALRG 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,859,465
Number of Sequences: 37544
Number of extensions: 229220
Number of successful extensions: 385
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)