Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20060X
         (916 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          43   3e-06
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      43   3e-06
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          40   3e-05
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      40   3e-05
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          40   4e-05
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      40   4e-05

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 343 FYLKAIIFTEYNKSHLDELEIVYXTXCNAXSFDXFFKXAAWARXNLNCGVYISA 504
           F  +  IFT  N     E+ +++    NA  F  F+K AAWAR  +N G++ +A
Sbjct: 90  FLSRNAIFTPLNSEQKYEVRMLFELLYNAKDFQTFYKTAAWARLRMNSGMFTTA 143


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 343 FYLKAIIFTEYNKSHLDELEIVYXTXCNAXSFDXFFKXAAWARXNLNCGVYISA 504
           F  +  IFT  N     E+ +++    NA  F  F+K AAWAR  +N G++ +A
Sbjct: 90  FLSRNAIFTPLNSEQKYEVRMLFELLYNAKDFQTFYKTAAWARLRMNSGMFTTA 143


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 361 IFTEYNKSHLDELEIVYXTXCNAXSFDXFFKXAAWARXNLNCGVYISALF 510
           +F+ Y    L E+  ++    +A  FD FFK A WA+ N+N   YI +L+
Sbjct: 96  LFSLYYPQLLREMSALFKLFYHAKDFDIFFKTALWAKNNINEAQYIYSLY 145


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 361 IFTEYNKSHLDELEIVYXTXCNAXSFDXFFKXAAWARXNLNCGVYISALF 510
           +F+ Y    L E+  ++    +A  FD FFK A WA+ N+N   YI +L+
Sbjct: 96  LFSLYYPQLLREMSALFKLFYHAKDFDIFFKTALWAKNNINEAQYIYSLY 145


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +1

Query: 361 IFTEYNKSHLDELEIVYXTXCNAXSFDXFFKXAAWARXNLNCGVYISAL 507
           +FT  NK    +  +++    +A +FD F+  A WAR N+N  +Y+ AL
Sbjct: 94  VFTMMNKEMRHQAVVLFRLLYSAKTFDVFYNTAVWARFNVNEQMYLYAL 142



 Score = 28.3 bits (60), Expect = 0.10
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 EDFTDPEAISNFKELKSKGFLPKGDHF 365
           +++ D EA++ F +L   G LP+G  F
Sbjct: 69  DNYNDKEAVNEFMQLLKHGMLPRGQVF 95


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 39.5 bits (88), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +1

Query: 361 IFTEYNKSHLDELEIVYXTXCNAXSFDXFFKXAAWARXNLNCGVYISAL 507
           +FT  NK    +  +++    +A +FD F+  A WAR N+N  +Y+ AL
Sbjct: 94  VFTMMNKEMRHQAVVLFRLLYSAKTFDVFYNTAVWARFNVNEQMYLYAL 142



 Score = 28.3 bits (60), Expect = 0.10
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 EDFTDPEAISNFKELKSKGFLPKGDHF 365
           +++ D EA++ F +L   G LP+G  F
Sbjct: 69  DNYNDKEAVNEFMQLLKHGMLPRGQVF 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,124
Number of Sequences: 438
Number of extensions: 2339
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)