Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20056
         (596 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.0  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.0  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   4.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   6.0  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   6.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -2

Query: 232  LLWSKTRSGCSWVYRSQILSPLPDTFQAPSTWKDAVATPNLKP 104
            L W+K R  C W   ++     P    + S+W+     P+ +P
Sbjct: 1135 LHWNKERKICDWPKSAKCEEKKPGHKPSTSSWQKP-TKPSYRP 1176


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 276 WTSSLNCRCPSTGSPCRGPGY 338
           W +  N +CP+   PC   G+
Sbjct: 606 WENVTNIQCPNADLPCPKDGH 626


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 276 WTSSLNCRCPSTGSPCRGPGY 338
           W +  N +CP+   PC   G+
Sbjct: 606 WENVTNIQCPNADLPCPKDGH 626


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 516 HKISTMIGLVHPPRSCRLCGKS 451
           H I+ +      P  CR+CGKS
Sbjct: 237 HSINLLEEDNQKPNVCRICGKS 258


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 292 FSDEVHVTSEIMIESAATSAL--LWSKTRSGCSWVYRS 185
           +S+  +++S  M  S   + L   W K+R   SW Y S
Sbjct: 259 YSNMDYLSSSTMSHSQFGNGLETSWGKSRDESSWFYNS 296


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 475 VLQALWQIPVVNSDYRFDV 419
           VLQ+LW  P  +  Y F +
Sbjct: 559 VLQSLWASPTCDLMYEFQI 577


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 180 IWDRYTHEHPERVFDHSNAD 239
           +W  ++H  P  VF  +NA+
Sbjct: 49  MWHHHSHMPPHSVFAANNAE 68


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 180 IWDRYTHEHPERVFDHSNAD 239
           +W  ++H  P  VF  +NA+
Sbjct: 49  MWHHHSHMPPHSVFAANNAE 68


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 93  CFPKGFKFGVATASFQVEGAWNVSGKG 173
           C P+G  FG +  +  + G   ++G G
Sbjct: 42  CSPQGASFGSSMLNSGMPGGMAMNGNG 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,445
Number of Sequences: 336
Number of extensions: 3253
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)