Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20056
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar...    26   3.6  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   6.3  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   6.3  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    25   6.3  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   6.3  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   8.4  

>SPAC19D5.06c |din1||Dhp1p-interacting protein
           Din1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 262 IMIESAATSALLWSKTRSGCSWVYRSQILSPLPDTFQAPS 143
           IM+E    S   ++     C W Y+ + +S LP+ + A S
Sbjct: 124 IMMEERTRSETSYANQDRMCYWGYKFEAISTLPEIWDACS 163


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 271 TSEIMIESAATSALLWSKTRSGCSWVYRSQILSPLPDTF 155
           T+ I+I  + T   ++S+  S   W+ +    SPL D +
Sbjct: 8   TNSIIINESDTKYEVYSEVNSSNRWIAKEDCPSPLEDVW 46


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 591 RQRLVERYPDADAIAERCEQ*PGVVHKISTMIGLVHPPRSCRLC 460
           R+RL+ERY DA    E   Q  GV    S    +VH   +C +C
Sbjct: 94  RERLLERYIDA---PEESLQKAGVGLSGSKQREVVHHEGTCEIC 134


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 226 WSKTRSGCSWVYRSQILSPLP 164
           WSK   G   +YR+++L  LP
Sbjct: 271 WSKVNEGMIKMYRAEVLGKLP 291


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +2

Query: 254 YHNFRRDVDLVTELSLSFYRFSVSWPRVLPTGYSNLVNEDGLXYYSELLDTLHKNNIKPV 433
           + NF +  +   ++     R+ V  P  L + Y  L+         E+ D L  N  KP+
Sbjct: 111 HKNFEQHAEFFKKIFEIGRRYKVLNPNRLGSTYGKLMYFVQDSMRPEIQDALGFNLFKPI 170

Query: 434 VTIYHW 451
           +T+Y +
Sbjct: 171 LTVYEF 176


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 199 WVYRSQILSPLPDTFQAPSTWKDAVA 122
           W YR QIL+  P        W D +A
Sbjct: 79  WAYRFQILNHTPSYIDNELEWLDEIA 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,573
Number of Sequences: 5004
Number of extensions: 52569
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)