Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20056
         (596 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)        102   3e-22
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   3e-22
SB_28137| Best HMM Match : rve (HMM E-Value=0.00026)                   33   0.13 
SB_40390| Best HMM Match : BON (HMM E-Value=0.68)                      29   2.2  
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.8  
SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0)                     28   6.6  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   27   8.7  
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      27   8.7  

>SB_26096| Best HMM Match : Glyco_hydro_1 (HMM E-Value=5.3e-19)
          Length = 204

 Score =  102 bits (244), Expect = 3e-22
 Identities = 41/85 (48%), Positives = 60/85 (70%)
 Frame = +2

Query: 254 YHNFRRDVDLVTELSLSFYRFSVSWPRVLPTGYSNLVNEDGLXYYSELLDTLHKNNIKPV 433
           YH    D+ L+  L +S YRFS+SW R+LP G  ++VN+ G+ YY+ ++D L   NI+PV
Sbjct: 67  YHKTDEDIQLLKSLGVSHYRFSISWARILPDGLLDVVNKSGVEYYNRVIDKLLAVNIQPV 126

Query: 434 VTIYHWDLPQSLQDLGGWTNPIIVD 508
            T+YH+DLPQ+LQD GGW N  +++
Sbjct: 127 ATLYHFDLPQALQDKGGWLNSRVIE 151



 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 27/53 (50%), Positives = 39/53 (73%)
 Frame = +3

Query: 96  FPKGFKFGVATASFQVEGAWNVSGKGESIWDRYTHEHPERVFDHSNADVAADS 254
           FP+ F +GVATA+ Q+EGAWN  GKG +IWD ++H+    + ++ NAD+A DS
Sbjct: 15  FPESFIWGVATAAHQIEGAWNEDGKGPNIWDAFSHK-TGNIHNNENADIACDS 66



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +1

Query: 436 HYLPLGFATEPAGPWRVDQSNHSRYFVDYARLLFTTFGDRVGVWITFNEP 585
           ++  L  A +  G W    S    +F  YAR+ F  FGDRV +W+T NEP
Sbjct: 130 YHFDLPQALQDKGGWL--NSRVIEWFAGYARVCFKLFGDRVRLWLTINEP 177


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score =  101 bits (243), Expect = 3e-22
 Identities = 40/85 (47%), Positives = 56/85 (65%)
 Frame = +2

Query: 254 YHNFRRDVDLVTELSLSFYRFSVSWPRVLPTGYSNLVNEDGLXYYSELLDTLHKNNIKPV 433
           YH ++ DV L+  L +  YRFS+SWPR+LP G   ++N  G+ YY+ L++ L   NI+PV
Sbjct: 90  YHKYKEDVQLLRNLGVKAYRFSISWPRILPKGTKEIINTKGIEYYNNLINELLHYNIQPV 149

Query: 434 VTIYHWDLPQSLQDLGGWTNPIIVD 508
            TIYHWDLP   +  G WTN  I++
Sbjct: 150 ATIYHWDLPVPFRMAGSWTNSSIIE 174



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 26/54 (48%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
 Frame = +3

Query: 96  FPKGFKFGVATASFQVEGAWNVSGKGESIWDRYTHEHP-ERVFDHSNADVAADS 254
           FP  F++G AT+++Q+EGAW+V GKG  +WD  TH H    +F +   DVA DS
Sbjct: 36  FPADFEWGSATSAYQIEGAWDVDGKGLGLWDYLTHSHQFSHLFKNQTGDVACDS 89



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/48 (47%), Positives = 27/48 (56%)
 Frame = +1

Query: 442 LPLGFATEPAGPWRVDQSNHSRYFVDYARLLFTTFGDRVGVWITFNEP 585
           LP+ F    AG W    S+   +F DYA + F  FGDRV  WIT NEP
Sbjct: 157 LPVPFRM--AGSWT--NSSIIEHFNDYAEICFKNFGDRVKKWITINEP 200


>SB_28137| Best HMM Match : rve (HMM E-Value=0.00026)
          Length = 293

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 329 PRVLPTGYSNLVNEDGLXYYSELLDTLHKNNIKPVVTIYHWDLPQSLQD--LGGWTNPII 502
           PRV+   + N    + L Y  E+    H  ++KP + I H   P ++Q+  +  W   +I
Sbjct: 153 PRVIARNHDNQKVIESLAYRQEMQKQYHDRHVKP-LPILHPGQPVTIQEPTIPKWKPAVI 211

Query: 503 VDILWTTPGYC 535
            + L   P YC
Sbjct: 212 KEKLEHAPRYC 222


>SB_40390| Best HMM Match : BON (HMM E-Value=0.68)
          Length = 561

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 207 PERVFDHSNADVAADSIIISDVTWTSSLNCRCPSTGSPCRGPGYCPPDTAI 359
           P+  FD    D+  D +II    ++      CP+   PC GP   PP TA+
Sbjct: 75  PQTPFDGILGDIPLDEVIIG---YSPDSENTCPT---PCYGPSAKPPATAL 119


>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2225

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +2

Query: 200  RTPGACLRPQQCGCGSRLYHNF 265
            RT GAC RPQ C   SR    F
Sbjct: 1955 RTSGACQRPQACPLASRCIETF 1976


>SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +2

Query: 71  GTTAGTTLFP*RFQIRSSHSVFPGRRSLE-RVWQRREYLGPIHPRTPGACLRPQQCGCGS 247
           GT AG T      Q R  H  +PG +SLE R +  R  L P+      +C R +    G+
Sbjct: 157 GTIAGETHVRELVQFRPLHGSYPGYQSLELRSFTMRPLLSPLR----SSCCRSEARASGT 212

Query: 248 R 250
           +
Sbjct: 213 Q 213


>SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 571

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 176 EYLGPIHPRTPGACLRPQQCGCGSRLYHNFRRDVDLVTELSLSFYRFSVSWPRVLPTGYS 355
           E + P+HP   G C+        ++LY       D     S+ + + S SW +V P  YS
Sbjct: 383 ELMSPLHPARSGTCV----VSHNNQLYVFGGSTNDKCLTSSMIYDQLSDSWSQVAPMSYS 438


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 271 TSEIMIESAATSALLWSKTRSGCSWVYRSQILSPLPDTFQAPST 140
           TS  ++ SAA++ +L + T S   WV       PL  TF    T
Sbjct: 545 TSGTLVSSAASAEILSAVTLSAGGWVAEDDGAKPLKYTFYQDKT 588


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 200  VGVSVPDTLSFARHVPG-SFDLERRCGYSEFETFRETKLFPPSSRTNY 60
            +G+ + DTLS+A+H+   S  +    G  +     E +L  P  RTNY
Sbjct: 1037 LGLYIDDTLSWAKHIEEISKKISAAIGALKRIRDHENRLAIPKPRTNY 1084


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,800,035
Number of Sequences: 59808
Number of extensions: 422779
Number of successful extensions: 1359
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)