Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20056
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...    84   6e-17
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...    83   1e-16
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC024785-9|ABQ40025.1|  359|Caenorhabditis elegans C-type lectin...    28   4.4  
AC024785-8|ABQ40024.1|  359|Caenorhabditis elegans C-type lectin...    28   4.4  
AC024785-7|ABQ40023.1|  359|Caenorhabditis elegans C-type lectin...    28   4.4  
AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical ...    28   4.4  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical...    28   5.8  

>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 34/78 (43%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
 Frame = +2

Query: 263 FRRDVDLVTELSLSFYRFSVSWPRVLPTGYSNLVNEDGLXYYSELLDTLHKNNIKPVVTI 442
           ++ DV L+ E+ ++ YRFS+SW R+LP G  + +NE+G+ +Y +L   L +NNI+PVVT+
Sbjct: 62  YKEDVALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTL 121

Query: 443 YHWDLPQSLQDLG-GWTN 493
           +H+D+P ++ D G  W N
Sbjct: 122 FHFDMPLAIYDNGTAWLN 139



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/55 (43%), Positives = 38/55 (69%)
 Frame = +3

Query: 96  FPKGFKFGVATASFQVEGAWNVSGKGESIWDRYTHEHPERVFDHSNADVAADSII 260
           FPK FK   ATA++Q+EGA +++G+G S WD    E P R+ D+S+ D++ D ++
Sbjct: 7   FPKNFKLATATAAYQIEGAKDLNGRGFSTWDAIRLE-PGRILDNSDPDLSCDGLL 60



 Score = 31.9 bits (69), Expect = 0.36
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 508 YFVDYARLLFTTFGDRVGVWITFNE 582
           +F  +A L F  FGD V  WIT+NE
Sbjct: 145 HFEKFADLCFQKFGDLVKTWITYNE 169


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 8/143 (5%)
 Frame = +2

Query: 89  TLFP*RFQIRSSHSVFP--GRRSLE----RVWQR-REYLGPIHPRTPGACLRPQQCGCGS 247
           T FP  FQ+ ++ + +   G ++L+      W   R   G IH  +           C  
Sbjct: 5   TKFPKNFQLATATAAYQIEGAKNLDGRGFSTWDSIRSENGRIHDNSD------PDLSCEG 58

Query: 248 RLYHNFRRDVDLVTELSLSFYRFSVSWPRVLPTGYSNLVNEDGLXYYSELLDTLHKNNIK 427
           RL   ++ DV L++++ ++ YRFS+SW R+LP G    +NEDG+ +Y ++   L  N I+
Sbjct: 59  RL--KYKEDVALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIE 116

Query: 428 PVVTIYHWDLPQSLQDLG-GWTN 493
           P+VT++H+D+P S+ D G  W N
Sbjct: 117 PIVTLFHFDMPLSIYDNGTSWLN 139



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 508 YFVDYARLLFTTFGDRVGVWITFNE 582
           +F  +A L F  FGD V  WITFNE
Sbjct: 145 HFEKFADLCFQKFGDLVKTWITFNE 169


>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
 Frame = +2

Query: 197 PRTPGA-CLRPQQCGCGSRLYHNFRRDVDLVTELSLSFYRFSVSWPRVLPTGYS----NL 361
           P T G  C R  + G G  L   +  D DLVT +S    R S S P   P   S     L
Sbjct: 567 PTTSGPMCRRAFEQGWGFILTKTYGLDKDLVTNVSPRIVRGSTSGPLYGPNQGSFMNIEL 626

Query: 362 VNEDGLXYYSELLDTLHKNNIKPVV 436
           ++E    Y+ + +  L +++   +V
Sbjct: 627 ISEKSCEYWLQCIRELKRDHPTKIV 651


>AC024785-9|ABQ40025.1|  359|Caenorhabditis elegans C-type lectin
           protein 75, isoform c protein.
          Length = 359

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +2

Query: 320 VSWPRVLPTGYSNLVNEDGLXYYSELL-----DTLHKNNIKPVVTIY 445
           +SW   LP GY+N  +  G  Y+ E +     DTL  N++   V  Y
Sbjct: 99  LSWDNGLPVGYTNFGSHVGENYFYEKISNTKWDTLGDNDVNYFVCSY 145


>AC024785-8|ABQ40024.1|  359|Caenorhabditis elegans C-type lectin
           protein 75, isoform b protein.
          Length = 359

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +2

Query: 320 VSWPRVLPTGYSNLVNEDGLXYYSELL-----DTLHKNNIKPVVTIY 445
           +SW   LP GY+N  +  G  Y+ E +     DTL  N++   V  Y
Sbjct: 99  LSWDNGLPVGYTNFGSHVGENYFYEKISNTKWDTLGDNDVNYFVCSY 145


>AC024785-7|ABQ40023.1|  359|Caenorhabditis elegans C-type lectin
           protein 75, isoform a protein.
          Length = 359

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +2

Query: 320 VSWPRVLPTGYSNLVNEDGLXYYSELL-----DTLHKNNIKPVVTIY 445
           +SW   LP GY+N  +  G  Y+ E +     DTL  N++   V  Y
Sbjct: 99  LSWDNGLPVGYTNFGSHVGENYFYEKISNTKWDTLGDNDVNYFVCSY 145


>AC006631-1|AAF39793.2|  787|Caenorhabditis elegans Hypothetical
           protein F27B3.5 protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 82  GNNFVSLKVSNSE*PQRLSRSKEPGTCLAKERVSGTDTPTNTRSVSST 225
           G +  ++KV ++  PQ +   +E    ++K   + +DTPT + + SS+
Sbjct: 354 GEDKENMKVKDTSNPQVMKNQRENPKSISKPEGNNSDTPTESGNSSSS 401


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 82  GNNFVSLKVSNSE*PQRLSRSKEPGTCLAKERVSGTDTPTNTRSVSST 225
           G +  ++KV ++  PQ +   +E    ++K   + +DTPT + + SS+
Sbjct: 561 GEDKENMKVKDTSNPQVMKNQRENPKSISKPEGNNSDTPTESGNSSSS 608


>AF067613-13|ABA54415.1|  443|Caenorhabditis elegans Hypothetical
           protein F56D6.1 protein.
          Length = 443

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +2

Query: 317 SVSWPRVLPTGYSNLVNEDGLXYYSELL-----DTLHKNNIKPVVTIY 445
           S+SW   LP  Y+NL +  G  Y+SE +     DTL  N+    V  Y
Sbjct: 98  SLSWDNGLPVVYTNLGSYLGQNYFSEKISNTKWDTLGDNSTNYFVCSY 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,270,539
Number of Sequences: 27780
Number of extensions: 309614
Number of successful extensions: 921
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)