Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20053
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        32   0.47 
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_3206| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00047)          30   1.4  
SB_52105| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0012)          30   1.4  
SB_8958| Best HMM Match : NUMOD1 (HMM E-Value=4.8)                     29   2.5  
SB_38737| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)                28   7.7  
SB_5463| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -1

Query: 616 YFMDPLLNYLHSHNQNLQSCEDNQSIVFQLKLIPRIYIYICTKY--KPKKMPI 464
           YF  P + Y H    NL SC + +  V        + I +CT Y  + +K P+
Sbjct: 576 YFHPPKIKYTHLEKYNLLSCSNKEIAVITKLCYNVLLILLCTYYAFRTRKTPL 628


>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 583 SHNQNLQSCEDNQSIVFQLKLIPRIYIYICTKYKPKK 473
           S N  + S ++++S+   +KL  +  +Y+C+ YKP K
Sbjct: 15  SPNHTIDSGDEDESLWVSVKLAKQKELYLCSFYKPPK 51


>SB_3206| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00047)
          Length = 256

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 583 SHNQNLQSCEDNQSIVFQLKLIPRIYIYICTKYKPKK 473
           S N  + S ++++S+   +KL  +  +Y+C+ YKP K
Sbjct: 72  SPNHTIDSGDEDESLWVSVKLAKQKELYLCSFYKPPK 108


>SB_52105| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0012)
          Length = 241

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 583 SHNQNLQSCEDNQSIVFQLKLIPRIYIYICTKYKPKK 473
           S N  + S ++++S+   +KL  +  +Y+C+ YKP K
Sbjct: 102 SPNHTIDSGDEDESLWVSVKLAKQKELYLCSFYKPPK 138


>SB_8958| Best HMM Match : NUMOD1 (HMM E-Value=4.8)
          Length = 174

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 44  KNRYHCRASVITYDDVIIQVRNEHNH*--FSHYVILILL*RDKIDFK 178
           +++Y  + S+  Y  + +  R+ +++    +HY+I+ L+ RD  D+K
Sbjct: 3   RDKYDYKKSIKQYISITLMPRDNYDYKKCINHYIIITLMPRDNYDYK 49


>SB_38737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 504 SIYVQNINRKKCQLEVLKNKFTNDKAINMAKVIFKSQKKDA 382
           S+ + N   KK Q+E L+    ND    +  ++ ++ KKDA
Sbjct: 16  SLKMDNKKSKKPQMEKLRRARINDSLNELKSLVLEAMKKDA 56


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 529 TEKLLIDYLHMIVSFDYDCVNNLTKD 606
           TE   ID+LH++V+   D    LTKD
Sbjct: 364 TELAYIDHLHVLVNVTIDSAGTLTKD 389


>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
          Length = 825

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -1

Query: 520 IPRIYIYICTKYKPKKMPIRGIEKQIYK*QSYKYGQSNIQITKKGCTLRYIMSL 359
           +  + +  C +Y+  ++PI G  +      S  Y  SN  I    C  RY++ L
Sbjct: 85  VKNVIVSCCHRYRVGRLPILGYAESQSSPSSLPYKSSNGTIVIVSCWHRYLVVL 138


>SB_5463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 442 KFVFQYL*LAFFSVYILYIYRYICVELVLTEKLLIDYLHMIVSFDYDCV 588
           +++ Q++  AF+S  +LY+  +I   L    K+ I+YL  + +  Y C+
Sbjct: 28  QYLVQFVHPAFYSFLVLYLVAFIVWVLFTVGKIKINYLWTVWA-AYSCL 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,827
Number of Sequences: 59808
Number of extensions: 307791
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)