Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20053
         (658 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens ...    31   2.7  
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    31   3.6  

>AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44225 fis, clone THYMU3006168. ).
          Length = 262

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +1

Query: 352 LVVTT*YTVMCILFL*FEYYFGHIYSFVICKFVFQYL*LAFFSVYILYIYRYICVELVLT 531
           LV T  YT +CI      Y    +YS  IC  V+       ++VY + +Y   C+ + + 
Sbjct: 4   LVYTYVYTCICIRVYVHVYGCTDVYSMYICMHVYM---CTLYTVY-MCVYMCTCIPVRVY 59

Query: 532 EKLLIDYLHM-IVSFDYDCV 588
             ++  Y+++ + ++ Y CV
Sbjct: 60  IHIIYTYMYIHMHAYAYMCV 79


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 9/62 (14%)
 Frame = +1

Query: 370 YTVMCILFL*FEYYFGHIYSFV-ICKFVFQYL*LAFFS-VYI-------LYIYRYICVEL 522
           Y  + I F  F Y + +I+ ++ IC +++ Y+ L  F+ +YI       L+I+ YIC+ L
Sbjct: 32  YIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYIFTYIYIYLHIFIYLHIFIYICICL 91

Query: 523 VL 528
            +
Sbjct: 92  YI 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,535,907
Number of Sequences: 237096
Number of extensions: 1350102
Number of successful extensions: 5644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5639
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)