Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20053
         (658 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ586733-1|CAE52502.1|  114|Drosophila melanogaster Mod(mdg4)-54...    37   0.028
AJ277190-1|CAB85485.1|  580|Drosophila melanogaster mod(mdg4)64....    31   1.8  
AE014297-3002|AAN13875.1|  580|Drosophila melanogaster CG32491-P...    31   1.8  
BT029293-1|ABK30930.1|  681|Drosophila melanogaster RT01152p pro...    29   5.6  
BT029292-1|ABK30929.1|  681|Drosophila melanogaster RT01151p pro...    29   5.6  
BT029291-1|ABK30928.1|  681|Drosophila melanogaster RT01150p pro...    29   5.6  
BT010123-1|AAQ22592.1|  489|Drosophila melanogaster AT19280p pro...    29   5.6  
AE014297-3156|AAF55998.2|  681|Drosophila melanogaster CG31160-P...    29   5.6  

>AJ586733-1|CAE52502.1|  114|Drosophila melanogaster Mod(mdg4)-54.5
           protein.
          Length = 114

 Score = 36.7 bits (81), Expect = 0.028
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +2

Query: 5   NRSHGSKATWFCYKNRY-HCRASVITYD---DVIIQVRNEHNH 121
           N S GSK  W C +NRY  C A +IT     ++II+   +HNH
Sbjct: 47  NNSRGSKTYWLCARNRYMRCAARIITCSVTGELIIK-NQQHNH 88


>AJ277190-1|CAB85485.1|  580|Drosophila melanogaster mod(mdg4)64.2
           protein.
          Length = 580

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 23  KATWFCYKN-RYHCRASVITYDDVIIQVRNEHNH 121
           + TW C    +  C+A VIT D   I  R +HNH
Sbjct: 435 QTTWRCADVLKLRCKAVVITRDGHFIDARRQHNH 468


>AE014297-3002|AAN13875.1|  580|Drosophila melanogaster CG32491-PN,
           isoform N protein.
          Length = 580

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 23  KATWFCYKN-RYHCRASVITYDDVIIQVRNEHNH 121
           + TW C    +  C+A VIT D   I  R +HNH
Sbjct: 435 QTTWRCADVLKLRCKAVVITRDGHFIDARRQHNH 468


>BT029293-1|ABK30930.1|  681|Drosophila melanogaster RT01152p
           protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +2

Query: 17  GSKATWFCYKNRYH-CRASVITYDDVIIQVRNEHNH 121
           G K  W C   R   CRA  IT+   II     HNH
Sbjct: 408 GMKTYWLCKSYRISMCRARCITHLGRIISATGVHNH 443


>BT029292-1|ABK30929.1|  681|Drosophila melanogaster RT01151p
           protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +2

Query: 17  GSKATWFCYKNRYH-CRASVITYDDVIIQVRNEHNH 121
           G K  W C   R   CRA  IT+   II     HNH
Sbjct: 408 GMKTYWLCKSYRISMCRARCITHLGRIISATGVHNH 443


>BT029291-1|ABK30928.1|  681|Drosophila melanogaster RT01150p
           protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +2

Query: 17  GSKATWFCYKNRYH-CRASVITYDDVIIQVRNEHNH 121
           G K  W C   R   CRA  IT+   II     HNH
Sbjct: 408 GMKTYWLCKSYRISMCRARCITHLGRIISATGVHNH 443


>BT010123-1|AAQ22592.1|  489|Drosophila melanogaster AT19280p
           protein.
          Length = 489

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +2

Query: 17  GSKATWFCYKNRYH-CRASVITYDDVIIQVRNEHNH 121
           G K  W C   R   CRA  IT+   II     HNH
Sbjct: 211 GMKTYWLCKSYRISMCRARCITHLGRIISATGVHNH 246


>AE014297-3156|AAF55998.2|  681|Drosophila melanogaster CG31160-PA
           protein.
          Length = 681

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +2

Query: 17  GSKATWFCYKNRYH-CRASVITYDDVIIQVRNEHNH 121
           G K  W C   R   CRA  IT+   II     HNH
Sbjct: 408 GMKTYWLCKSYRISMCRARCITHLGRIISATGVHNH 443


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,485,153
Number of Sequences: 53049
Number of extensions: 437627
Number of successful extensions: 921
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)