Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20053
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical ...    33   0.18 
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF099913-5|AAC68752.1|  305|Caenorhabditis elegans Hypothetical ...    28   5.1  
AF025468-4|AAB71045.1|  449|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical
           protein C08E3.8 protein.
          Length = 431

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -2

Query: 492 QNINRKKCQLEVLKNKFTNDKAINMAKVIFKSQKK-----DAHYGILCRYY*IFPLRH 334
           QN+  KK Q     N+ T  K I+ A++ FKS K      +AHY  L     + P+ H
Sbjct: 194 QNVQLKKFQFSNGSNQDTQKKFIDRAEIAFKSAKSSTRTVEAHYNSLAEIAQLLPIFH 251


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
            protein Y46G5A.6 protein.
          Length = 1002

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 380  CASFFCDLNITLAIFIALSFVNLFFNTSNWHFFRF 484
            C   F  + I +  F  L F+N FF+  N HFF+F
Sbjct: 916  CLVVFIIVIIGVYSFGILLFLNFFFHFENMHFFKF 950


>AF099913-5|AAC68752.1|  305|Caenorhabditis elegans Hypothetical
           protein C29F9.11 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -1

Query: 541 IVFQLKLIPRIYIYICTKYKPKKMPIRGI 455
           ++F+ KL+  +YI +CT+Y P+ +  R +
Sbjct: 10  LIFRPKLVFFLYICLCTRYSPQILRARKV 38


>AF025468-4|AAB71045.1|  449|Caenorhabditis elegans Hypothetical
           protein T27A1.5 protein.
          Length = 449

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 3/19 (15%)
 Frame = -3

Query: 53  ICSYSR---TKWPWIRDCG 6
           +CSYS+   TKW WIR+ G
Sbjct: 402 LCSYSKQELTKWVWIRNIG 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,600,130
Number of Sequences: 27780
Number of extensions: 252766
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)