Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20053
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.84 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 205 HPLNCNCSFAW 237
           +P NCNCS  W
Sbjct: 680 NPFNCNCSMDW 690


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 493 YIYRYICVELVLTEKLLIDYLHMIVSFD 576
           Y +R+I    +LT +L++++   +  FD
Sbjct: 373 YKFRHITEITILTVQLIVEFSKRLPGFD 400


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 258 FYLIIRGPCKTTVTI*WMQF 199
           F + + GPC   V + W+ F
Sbjct: 216 FLIQVYGPCVLLVVLSWVSF 235


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = -3

Query: 68  TLDSDICSYSRTKWPW-IRDC 9
           T  + +C Y  T WP+ I +C
Sbjct: 153 TTYTPVCEYDHTWWPYDILNC 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,362
Number of Sequences: 438
Number of extensions: 3328
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)